Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 RPL23AP93-201ENST00000440847 484 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AL359073.1-201ENST00000448036 403 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 RN7SL604P-201ENST00000492589 296 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 HAUS1P3-201ENST00000523909 662 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 MED28P5-201ENST00000528254 438 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 MIR3138-201ENST00000585238 82 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AP003117.1-201ENST00000602771 554 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC024023.1-201ENST00000624530 922 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 MTND4P31-201ENST00000425607 1343 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 SCN1A-220ENST00000641603 12506 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC092162.3-201ENST00000624511 1624 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 MAPK10-320ENST00000641462 6696 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC008549.2-201ENST00000333482 706 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 MIR142-201ENST00000384835 87 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 MIR134-201ENST00000385258 73 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 NPM1P10-201ENST00000398310 865 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC011933.1-201ENST00000413334 321 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AL356387.2-201ENST00000422272 243 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 RPL30P3-201ENST00000424262 333 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 CR848007.2-201ENST00000424918 787 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 OR2AH1P-201ENST00000425717 928 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 RPS12P10-201ENST00000427031 377 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 TPTE2P6-202ENST00000445572 1007 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC116533.1-201ENST00000459748 321 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 RPL5P30-201ENST00000465511 891 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 SYT14P1-201ENST00000481459 721 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 MRPL49P2-201ENST00000521066 465 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC022790.1-201ENST00000522872 204 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 POLR2KP1-201ENST00000553226 168 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC068831.4-201ENST00000556118 109 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 RN7SL435P-201ENST00000584418 282 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC115286.1-201ENST00000604298 434 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AC012409.3-201ENST00000611343 981 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 AL391684.1-202ENST00000641293 1636 ntBASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HDDC3Q8N4P3 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 RNU6-984P-201ENST00000363236 109 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 MIR659-201ENST00000384963 97 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 HMGB1P13-201ENST00000406019 642 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 RPS20P25-201ENST00000412447 352 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 MTCO3P4-201ENST00000419236 787 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AL035458.1-201ENST00000433096 585 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC025181.1-201ENST00000477507 416 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 IGKV2-36-201ENST00000519999 223 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 OR4U1P-201ENST00000554958 912 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AC233702.9-201ENST00000581528 203 ntBASIC4.6□□□□□ -1.67
HDDC3Q8N4P3 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms