Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 ZNF402P-201ENST00000404435 3100 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 AC130304.1-201ENST00000622942 2385 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 RNU6-185P-201ENST00000384421 107 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 NACAP7-201ENST00000407371 609 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 BX295541.1-201ENST00000417774 250 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 AC005033.1-201ENST00000428904 813 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 RGS5-217ENST00000451759 835 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 PSMC1P13-201ENST00000458195 985 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 RPS17P15-201ENST00000475609 349 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 PFN1P6-201ENST00000476786 399 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 RN7SL717P-201ENST00000478343 297 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 RPL17P2-201ENST00000491913 451 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AC012170.1-201ENST00000495139 359 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 AC018558.5-201ENST00000565840 952 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AC138915.2-201ENST00000569776 97 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 SNORD95-201ENST00000579879 68 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.3□□□□□ -1.4
SOX4Q06945 KC877982.1-201ENST00000602313 470 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 NRBF2P5-201ENST00000603087 788 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AC115286.1-201ENST00000604298 434 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AC112191.3-201ENST00000604371 277 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 AL035413.2-201ENST00000604801 525 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 BNIP3P10-201ENST00000605360 577 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 RN7SL544P-201ENST00000617232 284 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 MIR6886-201ENST00000619864 61 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 RN7SL763P-201ENST00000620922 284 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 MIR4302-201ENST00000638058 60 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC6.3□□□□□ -1.4
SOX4Q06945 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 AC007842.1-201ENST00000597336 2039 ntBASIC6.3□□□□□ -1.4
SOX4Q06945 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SOX4Q06945 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.3□□□□□ -1.4
SOX4Q06945 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SOX4Q06945 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
SOX4Q06945 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.29□□□□□ -1.4
SOX4Q06945 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.29□□□□□ -1.4
SOX4Q06945 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SOX4Q06945 SNORA64.1-201ENST00000362600 132 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 RNU4-79P-201ENST00000362764 141 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
SOX4Q06945 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC6.29□□□□□ -1.4
SOX4Q06945 RNU6-98P-201ENST00000384173 107 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AL360271.1-201ENST00000395679 510 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AL589647.1-201ENST00000402485 466 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 NPM1P38-201ENST00000403835 865 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 RNA5SP178-201ENST00000410380 128 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 RN7SKP286-201ENST00000410894 299 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 OR51A3P-201ENST00000413596 924 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX4Q06945 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.29□□□□□ -1.4
SOX4Q06945 AC062016.2-201ENST00000420950 676 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AC079355.1-201ENST00000421770 223 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 MTND2P23-201ENST00000422990 651 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX4Q06945 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SOX4Q06945 AL513175.1-201ENST00000431492 780 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 HMGB3P24-201ENST00000433260 622 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 RPL7P11-201ENST00000437586 658 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX4Q06945 PGBD4P3-201ENST00000440731 581 ntBASIC6.29□□□□□ -1.4
SOX4Q06945 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.29□□□□□ -1.4
SOX4Q06945 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms