Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CHIAP3-201ENST00000423668 1133 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 NPM1P34-201ENST00000428821 893 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 NFYAP1-201ENST00000431953 972 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 PTMAP6-201ENST00000439110 327 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC009263.1-201ENST00000441193 1239 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 VN1R96P-201ENST00000446052 858 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 CEACAMP6-201ENST00000452007 574 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 MTCO3P16-201ENST00000454456 754 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 DNAJC19P1-201ENST00000455312 319 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC110749.1-201ENST00000462007 357 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 RPS29P19-201ENST00000479709 171 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA3P55318 RNU7-143P-201ENST00000516781 65 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 OR7E10P-201ENST00000526420 991 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 AL133457.1-201ENST00000564251 987 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 MIR4458-201ENST00000578872 75 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 FAM106CP-201ENST00000582212 507 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC012417.1-201ENST00000582307 1039 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 SUMO2P15-201ENST00000604285 278 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AL049634.3-201ENST00000604968 457 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA3P55318 MIR6768-201ENST00000610734 72 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 U7.8-201ENST00000619968 63 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 MIR4302-201ENST00000638058 60 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
FOXA3P55318 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
FOXA3P55318 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA3P55318 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 C4BPAP1-201ENST00000415474 1893 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 TNPO1P3-201ENST00000436471 2662 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 SNORD6-201ENST00000365444 73 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 ATP5F1P4-201ENST00000397288 746 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 AC127526.1-201ENST00000417526 366 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 PTP4A1P5-201ENST00000420305 455 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 RPL21P109-201ENST00000422213 475 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 AL355433.1-201ENST00000422804 300 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC018635.1-201ENST00000468292 1030 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 RPL21P126-201ENST00000470049 478 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC021146.1-201ENST00000511202 716 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC008802.1-201ENST00000519121 791 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC092747.2-201ENST00000545069 983 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 MIR3176-201ENST00000582210 90 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC020910.2-201ENST00000603635 610 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 Z82195.1-201ENST00000604558 398 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC103710.3-201ENST00000608157 948 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 AC012531.5-201ENST00000611375 151 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 NAA60-237ENST00000615865 326 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 AL591424.2-201ENST00000617023 128 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA3P55318 AP000843.1-201ENST00000624880 701 ntBASIC3.03□□□□□ -1.92
FOXA3P55318 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA3P55318 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA3P55318 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
FOXA3P55318 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
FOXA3P55318 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.03□□□□□ -1.93
FOXA3P55318 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA3P55318 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
FOXA3P55318 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.02□□□□□ -1.93
FOXA3P55318 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA3P55318 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
FOXA3P55318 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms