Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
BDNFP23560 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 RNU6-481P-201ENST00000384194 107 ntBASIC5.14□□□□□ -1.59
BDNFP23560 RNU6-1151P-201ENST00000384684 107 ntBASIC5.14□□□□□ -1.59
BDNFP23560 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
BDNFP23560 U3.30-201ENST00000391308 210 ntBASIC5.14□□□□□ -1.59
BDNFP23560 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 CYB5AP4-201ENST00000396692 399 ntBASIC5.14□□□□□ -1.59
BDNFP23560 EIF5P1-201ENST00000400019 1231 ntBASIC5.14□□□□□ -1.59
BDNFP23560 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.14□□□□□ -1.59
BDNFP23560 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.14□□□□□ -1.59
BDNFP23560 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.14□□□□□ -1.59
BDNFP23560 AC087385.1-201ENST00000475062 312 ntBASIC5.14□□□□□ -1.59
BDNFP23560 RPS4XP6-201ENST00000477670 797 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AC007686.1-201ENST00000488511 463 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AC093755.1-201ENST00000512950 1023 ntBASIC5.14□□□□□ -1.59
BDNFP23560 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.14□□□□□ -1.59
BDNFP23560 AC104115.2-201ENST00000523026 687 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC5.14□□□□□ -1.59
BDNFP23560 AF279873.1-201ENST00000523393 313 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.14□□□□□ -1.59
BDNFP23560 MIR4270-201ENST00000581799 70 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 AC092474.3-201ENST00000603022 568 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AL512782.1-201ENST00000603093 364 ntBASIC5.14□□□□□ -1.59
BDNFP23560 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 AC026741.1-201ENST00000605892 482 ntBASIC5.14□□□□□ -1.59
BDNFP23560 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BDNFP23560 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.14□□□□□ -1.59
BDNFP23560 NCLP2-201ENST00000416078 1462 ntBASIC5.13□□□□□ -1.59
BDNFP23560 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BDNFP23560 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
BDNFP23560 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
BDNFP23560 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 MTCO1P24-201ENST00000515438 1558 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AL031595.2-201ENST00000624215 19071 ntBASIC5.13□□□□□ -1.59
BDNFP23560 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
BDNFP23560 XIAPP3-201ENST00000312918 795 ntBASIC5.13□□□□□ -1.59
BDNFP23560 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BDNFP23560 DSTNP4-201ENST00000399472 474 ntBASIC5.13□□□□□ -1.59
BDNFP23560 RN7SKP177-201ENST00000410567 355 ntBASIC5.13□□□□□ -1.59
BDNFP23560 RN7SKP100-201ENST00000411258 284 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC114755.2-201ENST00000413520 361 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.13□□□□□ -1.59
BDNFP23560 UBE2D3P3-201ENST00000426992 425 ntBASIC5.13□□□□□ -1.59
BDNFP23560 NRBF2P3-201ENST00000432731 865 ntBASIC5.13□□□□□ -1.59
BDNFP23560 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 CYCSP24-201ENST00000445119 316 ntBASIC5.13□□□□□ -1.59
BDNFP23560 HMGB3P30-201ENST00000457863 606 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.13□□□□□ -1.59
BDNFP23560 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
BDNFP23560 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 RN7SKP276-201ENST00000516242 268 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.13□□□□□ -1.59
BDNFP23560 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5.13□□□□□ -1.59
BDNFP23560 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 AC022069.1-201ENST00000582910 658 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 MTATP6P2-201ENST00000603319 678 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC5.13□□□□□ -1.59
BDNFP23560 AC021851.1-201ENST00000608537 1082 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AL136295.6-201ENST00000610486 658 ntBASIC5.13□□□□□ -1.59
BDNFP23560 FAM27B-201ENST00000610601 213 ntBASIC5.13□□□□□ -1.59
BDNFP23560 C2orf27A-204ENST00000623058 969 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC093875.1-201ENST00000623688 504 ntBASIC5.13□□□□□ -1.59
BDNFP23560 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 DCAF13P1-201ENST00000495256 1330 ntBASIC5.13□□□□□ -1.59
BDNFP23560 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BDNFP23560 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BDNFP23560 AC025263.3-201ENST00000622965 1396 ntBASIC5.13□□□□□ -1.59
BDNFP23560 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.13□□□□□ -1.59
BDNFP23560 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.13□□□□□ -1.59
BDNFP23560 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
BDNFP23560 AC090337.1-201ENST00000579651 2074 ntBASIC5.12□□□□□ -1.59
BDNFP23560 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.12□□□□□ -1.59
BDNFP23560 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.12□□□□□ -1.59
BDNFP23560 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms