Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-347P-201ENST00000516658 105 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC103833.1-201ENST00000517442 172 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 HAUS1P3-201ENST00000523909 662 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC107918.3-201ENST00000533272 382 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AL109766.1-201ENST00000555080 552 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC008759.1-201ENST00000589783 983 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AL450270.1-201ENST00000606160 391 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC004775.1-201ENST00000607389 753 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC008013.2-202ENST00000637965 364 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 LINC01355-201ENST00000566551 5444 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 AC093311.1-201ENST00000506586 2021 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.36□□□□□ -1.71
LHX3Q9UBR4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.36□□□□□ -1.71
LHX3Q9UBR4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 RNU1-14P-201ENST00000362759 152 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 SNORA68.2-201ENST00000391263 128 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 TAF9BP2-201ENST00000400856 499 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 RNA5SP36-201ENST00000410197 133 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 RN7SKP235-201ENST00000410662 305 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AL590609.2-201ENST00000421430 368 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AL589765.3-201ENST00000446084 462 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 RN7SL860P-201ENST00000473738 223 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC108475.1-201ENST00000507880 950 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 RN7SKP122-201ENST00000515923 296 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 RNA5SP519-201ENST00000516480 119 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AP003168.1-201ENST00000530091 307 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 MIR3939-201ENST00000582614 106 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 MIR548Y-201ENST00000582739 110 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC069366.1-201ENST00000583159 838 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 PSMA6P4-201ENST00000603247 718 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC010200.2-201ENST00000605098 235 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC090525.3-201ENST00000605601 189 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC116447.1-201ENST00000613153 453 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AL138721.1-201ENST00000616756 179 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC016957.2-201ENST00000616998 848 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AL645927.2-201ENST00000618350 349 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 MIR3653-201ENST00000625572 110 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 OR52H1-202ENST00000641796 1061 ntBASIC4.35□□□□□ -1.71
LHX3Q9UBR4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LHX3Q9UBR4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 RNU6-452P-201ENST00000384406 107 ntBASIC4.34□□□□□ -1.71
LHX3Q9UBR4 RNA5SP372-201ENST00000390836 115 ntBASIC4.34□□□□□ -1.71
LHX3Q9UBR4 AL161909.1-201ENST00000397390 712 ntBASIC4.34□□□□□ -1.71
LHX3Q9UBR4 COX6CP17-201ENST00000421389 185 ntBASIC4.34□□□□□ -1.71
LHX3Q9UBR4 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.34□□□□□ -1.71
LHX3Q9UBR4 RPS26P47-201ENST00000427219 348 ntBASIC4.34□□□□□ -1.71
LHX3Q9UBR4 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 199.2 ms