Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 HMGB1P20-201ENST00000402555 677 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RPL6P29-201ENST00000414863 865 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 CDK8P2-201ENST00000415020 547 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 DPPA2P2-201ENST00000418220 897 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC083875.1-201ENST00000419509 405 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 CRIP1P1-201ENST00000427567 185 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 C8orf59P1-201ENST00000429930 303 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 USP24P1-201ENST00000433802 779 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 FMO7P-201ENST00000436045 768 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 GAPDHP48-201ENST00000436626 961 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC064862.4-201ENST00000442180 334 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 TCEA1P3-201ENST00000443005 880 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 IGBP1P3-201ENST00000447449 1000 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 OR7E116P-201ENST00000448529 957 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC016724.1-201ENST00000453215 421 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 DNAJC19P1-201ENST00000455312 319 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 NXT1P1-201ENST00000458481 316 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RPL32P33-201ENST00000487023 394 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 OR4G11P-201ENST00000492842 939 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC105384.2-201ENST00000508433 640 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC109458.1-201ENST00000508858 316 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RPS27AP18-201ENST00000515536 459 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RNU6-720P-201ENST00000516363 108 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC087276.1-201ENST00000529659 480 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 IGBP1P1-201ENST00000554337 1009 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 NMNAT1P5-201ENST00000559657 841 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC010546.1-201ENST00000569391 485 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AP001004.1-201ENST00000582468 324 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC087683.1-201ENST00000591187 441 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AL136363.2-201ENST00000604173 851 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC092354.2-201ENST00000607786 514 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC239868.4-201ENST00000608318 671 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC005332.10-201ENST00000612725 619 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC008115.3-201ENST00000614874 549 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC018816.2-201ENST00000621460 353 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 AC099654.6-201ENST00000636487 512 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 MAPK10-338ENST00000641647 3362 ntBASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRIM39Q9HCM9 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL356473.1-201ENST00000406203 1408 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 TMSB4XP4-201ENST00000323496 618 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RNU6-462P-201ENST00000362659 105 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RNU6-1119P-201ENST00000384349 108 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 Y_RNA.517-201ENST00000384551 106 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC092647.1-201ENST00000420654 287 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AC009237.2-201ENST00000421358 284 ntBASIC5.68□□□□□ -1.5
TRIM39Q9HCM9 AL953862.1-201ENST00000423016 168 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms