Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AL020997.2-201ENST00000602607 184 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC018618.2-201ENST00000604770 446 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AL121890.3-201ENST00000618494 516 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 CCT8P1-201ENST00000413611 1657 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 HSPA8P19-201ENST00000505359 1517 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC025031.4-201ENST00000621248 3271 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 AC093311.1-201ENST00000506586 2021 ntBASIC4.5□□□□□ -1.69
CCDC3Q9BQI4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 RN7SKP224-201ENST00000364140 325 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 RNA5SP479-201ENST00000364858 117 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 HMGB1P13-201ENST00000406019 642 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 OR51B3P-201ENST00000412287 913 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC105402.1-201ENST00000413336 545 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 LINC01347-201ENST00000417964 355 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 EIF4HP2-201ENST00000424380 563 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC004975.1-201ENST00000428733 208 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 MTCO1P43-201ENST00000431831 488 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 MRPL48P1-201ENST00000445390 636 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 GXYLT1P1-201ENST00000446657 490 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 BTF3P6-201ENST00000448054 499 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 RPL23AP24-201ENST00000458203 385 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC010618.1-201ENST00000469924 477 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC098799.3-201ENST00000506095 438 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 HMGB3P16-201ENST00000508037 287 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 MTCO3P27-201ENST00000514397 196 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 RNU5A-7P-201ENST00000515979 116 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 IGLVIV-65-201ENST00000517313 360 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AP000916.1-201ENST00000533869 835 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 SULT1C2P2-201ENST00000562517 294 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC115286.1-201ENST00000604298 434 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC023813.4-201ENST00000607580 580 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC012409.3-201ENST00000611343 981 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 MIR6716-201ENST00000613413 80 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC011944.2-201ENST00000624440 683 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC3Q9BQI4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 MTND4P9-201ENST00000507819 1346 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC021146.4-201ENST00000309229 279 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 HMGB3P19-201ENST00000403971 560 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AP000580.1-201ENST00000404439 358 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AL080315.1-201ENST00000406055 466 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 CTSL3P-202ENST00000412179 788 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 RPL7AP25-201ENST00000423357 805 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 MTCO3P21-201ENST00000430791 643 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 MTND2P2-201ENST00000434633 945 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 AC044797.1-201ENST00000445744 679 ntBASIC4.48□□□□□ -1.69
CCDC3Q9BQI4 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms