Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC093752.1-206ENST00000511823 336 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 MORF4L1P3-201ENST00000525966 950 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC027104.1-201ENST00000563702 681 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 ATP5F1P7-201ENST00000567330 760 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 OR1F2P-201ENST00000570470 933 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 RN7SL52P-201ENST00000584271 284 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC125494.3-201ENST00000602759 455 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC013468.1-201ENST00000608680 598 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC093799.2-201ENST00000610062 578 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AC100827.5-201ENST00000615883 426 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 AL078595.3-201ENST00000623815 1166 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 PHKBP1-201ENST00000450951 1951 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.12□□□□□ -1.75
NKX3-1Q99801 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
NKX3-1Q99801 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.12□□□□□ -1.75
NKX3-1Q99801 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 RNU1-82P-201ENST00000390851 165 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL035419.1-201ENST00000397037 564 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 RPS24P12-201ENST00000402084 394 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AP000357.1-201ENST00000409926 1165 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 CYCSP10-201ENST00000417973 294 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 DDX39BP1-205ENST00000422507 192 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 RPS17P8-201ENST00000434525 335 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC093414.1-201ENST00000434712 514 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 HMGB1P45-201ENST00000435986 653 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC068135.1-201ENST00000446164 246 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC073587.1-201ENST00000447093 876 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 RPL35AP28-201ENST00000459730 331 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC104687.1-201ENST00000485829 412 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC108729.1-201ENST00000487812 947 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 RN7SL244P-201ENST00000493405 297 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC008565.1-201ENST00000509046 885 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC110775.1-201ENST00000513721 462 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 HMGB1P23-201ENST00000518743 568 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AP001922.4-201ENST00000526967 290 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC022882.1-201ENST00000532142 501 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC006518.2-201ENST00000542513 940 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 POLR2KP1-201ENST00000553226 168 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC079075.1-201ENST00000559543 878 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 MIR4509-3-201ENST00000578671 94 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 MIR4509-2-201ENST00000583920 94 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AP001160.4-201ENST00000596971 382 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AP002906.1-201ENST00000603405 233 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL365400.2-201ENST00000605604 902 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC023813.4-201ENST00000607580 580 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC133644.2-201ENST00000608142 540 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AL157392.4-201ENST00000609756 345 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 MIR4509-1-201ENST00000618224 94 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC024595.1-201ENST00000623088 387 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 AC139713.2-210ENST00000641741 992 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 MAPK10-303ENST00000641324 3959 ntBASIC4.11□□□□□ -1.75
NKX3-1Q99801 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.11□□□□□ -1.75
NKX3-1Q99801 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NKX3-1Q99801 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms