Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RPS12P10-201ENST00000427031 377 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 ACTR3P2-201ENST00000439585 1257 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 AC012671.1-201ENST00000451912 203 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 AC008694.2-201ENST00000517591 306 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 IGKV1-32-201ENST00000519290 311 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 AL121594.4-201ENST00000556211 1196 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 MIR4436B2-201ENST00000581415 91 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 MIR4436B1-201ENST00000583272 91 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 AC245128.3-201ENST00000594721 748 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 AC242628.1-201ENST00000606810 391 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 AL138721.1-201ENST00000616756 179 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS39Q96JC1 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC018529.3-201ENST00000624212 2254 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS39Q96JC1 MIR124-3-201ENST00000384866 87 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL589655.1-201ENST00000405398 482 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 Z86062.1-201ENST00000406773 777 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 RN7SKP216-201ENST00000411050 312 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC234782.4-201ENST00000417646 1048 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 SKP1P3-201ENST00000429280 487 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 FTH1P6-201ENST00000430768 320 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC105402.2-201ENST00000438503 358 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 YWHAZP2-201ENST00000440317 728 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 RPL23AP93-201ENST00000440847 484 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 MTND3P4-201ENST00000453537 303 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC133473.1-201ENST00000455173 299 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC092324.1-201ENST00000468671 324 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 IGLV3-26-201ENST00000520756 302 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 OR5M2P-201ENST00000529003 936 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC135001.1-201ENST00000544546 283 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 POLR2KP1-201ENST00000553226 168 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC067805.1-201ENST00000559344 470 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC069304.3-201ENST00000603938 1084 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 SUMO2P14-201ENST00000604488 293 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL160290.3-201ENST00000604869 165 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL049539.1-201ENST00000611964 459 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL158196.1-201ENST00000616786 434 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC009237.17-201ENST00000618111 748 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 MIR7154-201ENST00000620673 73 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AC007546.2-201ENST00000623996 360 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AL139254.3-201ENST00000641097 674 ntBASIC4.47□□□□□ -1.69
VPS39Q96JC1 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS39Q96JC1 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS39Q96JC1 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS39Q96JC1 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS39Q96JC1 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS39Q96JC1 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS39Q96JC1 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS39Q96JC1 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS39Q96JC1 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC067945.1-201ENST00000342609 618 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 RNA5SP307-201ENST00000362863 116 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 SNORA58B-201ENST00000364259 136 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC136624.1-201ENST00000400791 413 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 AL133270.1-201ENST00000402635 279 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 SNORA74C-2-201ENST00000411179 201 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.46□□□□□ -1.7
VPS39Q96JC1 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS39Q96JC1 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms