Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 HMGB3P16-201ENST00000508037 287 ntBASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 AC104619.4-201ENST00000510773 249 ntBASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 RPL23AP94-201ENST00000512518 302 ntBASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 AC116312.1-201ENST00000606841 314 ntBASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
ALMS1Q8TCU4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 Y_RNA.111-201ENST00000363248 100 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 SNORA48.2-201ENST00000390926 124 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 RNU2-65P-201ENST00000410162 185 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC064801.1-201ENST00000612025 407 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 MTND6P5-201ENST00000448266 512 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 VN1R32P-201ENST00000452234 905 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 RN7SKP46-201ENST00000515942 234 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC022655.2-201ENST00000577280 318 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC008638.3-201ENST00000603341 463 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC016590.3-201ENST00000611171 753 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 NAMPTP1-201ENST00000440465 2514 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 GLS-204ENST00000409428 816 ntTSL 2 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 VN1R51P-201ENST00000411675 945 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 HSPD1P21-201ENST00000436541 245 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AL049873.1-201ENST00000480540 376 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 RPS4XP18-201ENST00000495480 763 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 OR5B10P-201ENST00000532869 642 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC115621.1-201ENST00000604653 858 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC244517.3-201ENST00000616254 1235 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 AC243312.2-201ENST00000623340 601 ntBASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
ALMS1Q8TCU4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AL035423.1-201ENST00000420331 213 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AL391219.1-201ENST00000422570 483 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 CASC19-203ENST00000523510 575 ntTSL 3 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 RNU1-33P-201ENST00000364249 162 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 MIR921-201ENST00000401133 56 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 BX510359.1-201ENST00000456973 237 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 DEFB109F-201ENST00000491870 277 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AC124068.1-201ENST00000563131 678 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 AC091167.4-201ENST00000605079 184 ntBASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ALMS1Q8TCU4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms