Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC058791.1-201ENST00000608412 3198 ntBASIC6.54□□□□□ -1.36
CUX1P39880 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC6.54□□□□□ -1.36
CUX1P39880 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CUX1P39880 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CUX1P39880 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
CUX1P39880 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.53□□□□□ -1.36
CUX1P39880 ZNF736P2Y-201ENST00000416040 1279 ntBASIC6.53□□□□□ -1.36
CUX1P39880 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 AL133244.1-201ENST00000456007 258 ntBASIC6.53□□□□□ -1.36
CUX1P39880 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC6.53□□□□□ -1.36
CUX1P39880 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.53□□□□□ -1.36
CUX1P39880 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC6.53□□□□□ -1.36
CUX1P39880 RN7SKP13-201ENST00000515933 244 ntBASIC6.53□□□□□ -1.36
CUX1P39880 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC6.53□□□□□ -1.36
CUX1P39880 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.53□□□□□ -1.36
CUX1P39880 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC6.53□□□□□ -1.36
CUX1P39880 AC026368.1-201ENST00000614934 690 ntBASIC6.53□□□□□ -1.36
CUX1P39880 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 MAPK10-320ENST00000641462 6696 ntBASIC6.53□□□□□ -1.36
CUX1P39880 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CUX1P39880 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC6.53□□□□□ -1.36
CUX1P39880 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
CUX1P39880 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
CUX1P39880 CYCSP4-201ENST00000429682 331 ntBASIC6.52□□□□□ -1.37
CUX1P39880 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC6.52□□□□□ -1.37
CUX1P39880 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC6.52□□□□□ -1.37
CUX1P39880 RN7SKP46-201ENST00000515942 234 ntBASIC6.52□□□□□ -1.37
CUX1P39880 RN7SKP18-201ENST00000516005 275 ntBASIC6.52□□□□□ -1.37
CUX1P39880 AC104662.1-201ENST00000604448 511 ntBASIC6.52□□□□□ -1.37
CUX1P39880 AL137849.1-201ENST00000604767 169 ntBASIC6.52□□□□□ -1.37
CUX1P39880 AC124312.6-202ENST00000623624 418 ntBASIC6.52□□□□□ -1.37
CUX1P39880 AC138965.3-201ENST00000623875 498 ntBASIC6.52□□□□□ -1.37
CUX1P39880 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CUX1P39880 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CUX1P39880 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.52□□□□□ -1.37
CUX1P39880 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CUX1P39880 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC6.52□□□□□ -1.37
CUX1P39880 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CUX1P39880 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CUX1P39880 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.51□□□□□ -1.37
CUX1P39880 OR6K3-202ENST00000368146 996 ntBASIC6.51□□□□□ -1.37
CUX1P39880 OR52E6-202ENST00000379946 954 ntBASIC6.51□□□□□ -1.37
CUX1P39880 MIR195-201ENST00000385194 87 ntBASIC6.51□□□□□ -1.37
CUX1P39880 VN1R8P-201ENST00000407739 893 ntBASIC6.51□□□□□ -1.37
CUX1P39880 RNU2-65P-201ENST00000410162 185 ntBASIC6.51□□□□□ -1.37
CUX1P39880 AC073335.1-201ENST00000427776 363 ntBASIC6.51□□□□□ -1.37
CUX1P39880 RPS3AP46-201ENST00000448352 682 ntBASIC6.51□□□□□ -1.37
CUX1P39880 AC006517.1-201ENST00000480485 328 ntBASIC6.51□□□□□ -1.37
CUX1P39880 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC6.51□□□□□ -1.37
CUX1P39880 AC119751.5-201ENST00000514077 770 ntBASIC6.51□□□□□ -1.37
CUX1P39880 AC008694.2-201ENST00000517591 306 ntBASIC6.51□□□□□ -1.37
CUX1P39880 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC6.51□□□□□ -1.37
CUX1P39880 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC6.51□□□□□ -1.37
CUX1P39880 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC6.51□□□□□ -1.37
CUX1P39880 AC092354.2-201ENST00000607786 514 ntBASIC6.51□□□□□ -1.37
CUX1P39880 AC243654.2-201ENST00000612843 443 ntBASIC6.51□□□□□ -1.37
CUX1P39880 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC6.51□□□□□ -1.37
CUX1P39880 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
CUX1P39880 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC6.51□□□□□ -1.37
CUX1P39880 AP001284.1-201ENST00000528393 2118 ntBASIC6.51□□□□□ -1.37
CUX1P39880 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC6.51□□□□□ -1.37
CUX1P39880 RNA5SP267-201ENST00000364893 126 ntBASIC6.5□□□□□ -1.37
CUX1P39880 Z92545.1-201ENST00000411782 234 ntBASIC6.5□□□□□ -1.37
CUX1P39880 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC6.5□□□□□ -1.37
CUX1P39880 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CUX1P39880 CYCSP32-201ENST00000440548 321 ntBASIC6.5□□□□□ -1.37
CUX1P39880 RPL21P23-201ENST00000446654 460 ntBASIC6.5□□□□□ -1.37
CUX1P39880 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.5□□□□□ -1.37
CUX1P39880 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
CUX1P39880 AC020914.6-201ENST00000594327 272 ntBASIC6.5□□□□□ -1.37
CUX1P39880 SNORD91B-202ENST00000608459 222 ntBASIC6.5□□□□□ -1.37
CUX1P39880 Z95327.2-201ENST00000414579 1873 ntBASIC6.5□□□□□ -1.37
CUX1P39880 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC6.5□□□□□ -1.37
CUX1P39880 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
CUX1P39880 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC6.5□□□□□ -1.37
CUX1P39880 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC6.5□□□□□ -1.37
CUX1P39880 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.5□□□□□ -1.37
CUX1P39880 TEX41-265ENST00000627785 704 ntTSL 5 BASIC6.5□□□□□ -1.37
CUX1P39880 TEX41-280ENST00000629185 591 ntTSL 5 BASIC6.5□□□□□ -1.37
CUX1P39880 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.49□□□□□ -1.37
CUX1P39880 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CUX1P39880 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CUX1P39880 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC6.49□□□□□ -1.37
CUX1P39880 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CUX1P39880 HSPD1P11-201ENST00000508643 1702 ntBASIC6.49□□□□□ -1.37
CUX1P39880 ZNF602P-201ENST00000405929 924 ntBASIC6.49□□□□□ -1.37
CUX1P39880 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC6.49□□□□□ -1.37
CUX1P39880 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC6.49□□□□□ -1.37
CUX1P39880 AL390879.2-203ENST00000426943 1121 ntBASIC6.49□□□□□ -1.37
CUX1P39880 AC073387.1-201ENST00000453261 709 ntBASIC6.49□□□□□ -1.37
CUX1P39880 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.49□□□□□ -1.37
CUX1P39880 AC012158.1-204ENST00000483430 465 ntBASIC6.49□□□□□ -1.37
CUX1P39880 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC6.49□□□□□ -1.37
CUX1P39880 OR5B10P-201ENST00000532869 642 ntBASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms