Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MIR128-1-201ENST00000384921 82 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AL590609.2-201ENST00000421430 368 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 RPL23AP25-201ENST00000430973 463 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 RNA5SP103-201ENST00000459503 118 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AL591473.1-201ENST00000464297 313 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AC108751.2-201ENST00000469993 231 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.85□□□□□ -1.63
BRCA1P38398 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 OR5B10P-201ENST00000532869 642 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.85□□□□□ -1.63
BRCA1P38398 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AC093524.1-201ENST00000564266 1094 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.85□□□□□ -1.63
BRCA1P38398 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.85□□□□□ -1.63
BRCA1P38398 AL392088.2-201ENST00000637607 285 ntBASIC4.85□□□□□ -1.63
BRCA1P38398 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
BRCA1P38398 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
BRCA1P38398 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRCA1P38398 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
BRCA1P38398 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
BRCA1P38398 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRCA1P38398 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
BRCA1P38398 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.84□□□□□ -1.63
BRCA1P38398 ATP5A1P2-201ENST00000412323 255 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 AC005300.1-201ENST00000428401 373 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.84□□□□□ -1.63
BRCA1P38398 RPS27AP15-201ENST00000447672 466 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 RPL7P24-201ENST00000493052 752 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.84□□□□□ -1.63
BRCA1P38398 AC022146.1-201ENST00000595307 847 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 AL137849.1-201ENST00000604767 169 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 AL121890.2-201ENST00000617644 465 ntBASIC4.84□□□□□ -1.63
BRCA1P38398 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
BRCA1P38398 AL133268.1-201ENST00000405676 1401 ntBASIC4.84□□□□□ -1.64
BRCA1P38398 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
BRCA1P38398 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.83□□□□□ -1.64
BRCA1P38398 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.83□□□□□ -1.64
BRCA1P38398 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.83□□□□□ -1.64
BRCA1P38398 AC008481.1-201ENST00000463278 396 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.83□□□□□ -1.64
BRCA1P38398 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.83□□□□□ -1.64
BRCA1P38398 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
BRCA1P38398 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.83□□□□□ -1.64
BRCA1P38398 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.83□□□□□ -1.64
BRCA1P38398 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
BRCA1P38398 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.83□□□□□ -1.64
BRCA1P38398 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.83□□□□□ -1.64
BRCA1P38398 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
BRCA1P38398 DDX18P6-201ENST00000450119 1997 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
BRCA1P38398 AP002512.4-202ENST00000641599 4530 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
BRCA1P38398 MIR1271-201ENST00000408537 86 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 RPS29P4-201ENST00000414733 161 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 OR2AH1P-201ENST00000425717 928 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 FABP3P2-201ENST00000453169 399 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 AC114982.2-201ENST00000461396 358 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 AC112206.1-201ENST00000468416 477 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.83□□□□□ -1.64
BRCA1P38398 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC4.83□□□□□ -1.64
BRCA1P38398 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BRCA1P38398 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.82□□□□□ -1.64
BRCA1P38398 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.82□□□□□ -1.64
BRCA1P38398 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
BRCA1P38398 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 RNU1-33P-201ENST00000364249 162 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 CYCSP4-201ENST00000429682 331 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 PRELID3BP10-201ENST00000431957 584 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.82□□□□□ -1.64
BRCA1P38398 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.82□□□□□ -1.64
BRCA1P38398 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.82□□□□□ -1.64
BRCA1P38398 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.82□□□□□ -1.64
BRCA1P38398 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.82□□□□□ -1.64
BRCA1P38398 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.82□□□□□ -1.64
BRCA1P38398 MIMT1-201ENST00000597105 1050 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 AC015922.4-201ENST00000612568 690 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 AP005264.7-201ENST00000625003 745 ntBASIC4.82□□□□□ -1.64
BRCA1P38398 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BRCA1P38398 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.82□□□□□ -1.64
BRCA1P38398 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms