Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC139783.2-201ENST00000504847 1145 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 NPM1P52-201ENST00000518264 846 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 OR5M7P-201ENST00000526140 972 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC007424.1-203ENST00000554613 687 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC079587.1-201ENST00000603846 277 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC012603.1-201ENST00000606424 528 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL445423.1-201ENST00000609941 536 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL021997.2-201ENST00000615674 271 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC090017.1-201ENST00000548612 1779 ntBASIC3.24□□□□□ -1.89
HLA-DMBP28068 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.24□□□□□ -1.89
HLA-DMBP28068 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HLA-DMBP28068 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 Z73965.1-201ENST00000623412 2297 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 RNA5SP388-201ENST00000362584 119 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 RNU6-1279P-201ENST00000383917 103 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AL356387.2-201ENST00000422272 243 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AL732292.1-201ENST00000426692 226 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 TRGV7-201ENST00000427089 353 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 EIF2S2P3-201ENST00000428356 999 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 ELOCP18-201ENST00000434209 337 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 CEACAMP1-201ENST00000434624 1035 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 RPL23AP52-201ENST00000439311 478 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 RPL23AP24-201ENST00000458203 385 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 EIF4A2P4-201ENST00000458691 1196 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC011276.1-201ENST00000469688 323 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 S100A11P1-201ENST00000477525 312 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC104164.2-201ENST00000496953 495 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC025554.1-201ENST00000505641 188 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AL592156.1-201ENST00000508758 304 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 PARP4P3-201ENST00000510265 317 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC109635.6-201ENST00000525487 1113 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AP000827.1-201ENST00000527814 258 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 RFPL1S-203ENST00000539579 330 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AL109766.1-201ENST00000555080 552 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 PARP1P2-201ENST00000556806 195 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC124068.1-201ENST00000563131 678 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 MIR432-201ENST00000606207 94 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC090948.1-201ENST00000607464 549 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 OR6R2P-201ENST00000609216 300 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC012409.3-201ENST00000611343 981 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC064801.1-201ENST00000612025 407 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC083809.1-201ENST00000615051 472 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AC008725.1-201ENST00000605123 2263 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 AL133412.1-201ENST00000380194 2992 ntBASIC3.23□□□□□ -1.89
HLA-DMBP28068 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
HLA-DMBP28068 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HLA-DMBP28068 Z82217.1-201ENST00000625157 8149 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DMBP28068 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.22□□□□□ -1.89
HLA-DMBP28068 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HLA-DMBP28068 AL627171.1-201ENST00000618845 1308 ntBASIC3.22□□□□□ -1.89
HLA-DMBP28068 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms