Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A3P25940 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL5A3P25940 OR6K3-202ENST00000368146 996 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 MIR34B-201ENST00000385076 84 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC4.89□□□□□ -1.63
COL5A3P25940 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.89□□□□□ -1.63
COL5A3P25940 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.89□□□□□ -1.63
COL5A3P25940 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.89□□□□□ -1.63
COL5A3P25940 AL354760.1-201ENST00000608357 643 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 AC119674.1-207ENST00000641355 633 ntBASIC4.89□□□□□ -1.63
COL5A3P25940 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.88□□□□□ -1.63
COL5A3P25940 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.88□□□□□ -1.63
COL5A3P25940 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A3P25940 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A3P25940 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL5A3P25940 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A3P25940 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
COL5A3P25940 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL5A3P25940 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A3P25940 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL5A3P25940 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A3P25940 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.88□□□□□ -1.63
COL5A3P25940 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL5A3P25940 RNA5SP267-201ENST00000364893 126 ntBASIC4.88□□□□□ -1.63
COL5A3P25940 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC4.88□□□□□ -1.63
COL5A3P25940 AC119751.5-201ENST00000514077 770 ntBASIC4.88□□□□□ -1.63
COL5A3P25940 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.88□□□□□ -1.63
COL5A3P25940 AC084759.1-201ENST00000561168 290 ntBASIC4.88□□□□□ -1.63
COL5A3P25940 ELOCP35-201ENST00000604289 336 ntBASIC4.88□□□□□ -1.63
COL5A3P25940 AC095038.2-201ENST00000621464 1070 ntBASIC4.88□□□□□ -1.63
COL5A3P25940 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.88□□□□□ -1.63
COL5A3P25940 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A3P25940 AC083899.2-201ENST00000423285 1376 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A3P25940 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A3P25940 RNU1-15P-201ENST00000353977 144 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A3P25940 CYCSP10-201ENST00000417973 294 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A3P25940 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.87□□□□□ -1.63
COL5A3P25940 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.87□□□□□ -1.63
COL5A3P25940 HMGB1P37-201ENST00000439613 609 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A3P25940 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.87□□□□□ -1.63
COL5A3P25940 RNA5SP164-201ENST00000516533 110 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 IGLV3-26-201ENST00000520756 302 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.87□□□□□ -1.63
COL5A3P25940 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.87□□□□□ -1.63
COL5A3P25940 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
COL5A3P25940 AF131215.7-201ENST00000602443 707 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A3P25940 AL355365.1-201ENST00000616480 294 ntBASIC4.87□□□□□ -1.63
COL5A3P25940 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A3P25940 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL5A3P25940 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL5A3P25940 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.87□□□□□ -1.63
COL5A3P25940 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A3P25940 RNVU1-14-201ENST00000384770 164 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 RPL7P60-201ENST00000397636 735 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A3P25940 RPS29P4-201ENST00000414733 161 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A3P25940 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A3P25940 AL591503.2-201ENST00000442314 1005 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 GEMIN8P3-201ENST00000445417 720 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 AC006511.1-201ENST00000470614 315 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 SNORA70.24-201ENST00000517233 118 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A3P25940 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A3P25940 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A3P25940 OR5B10P-201ENST00000532869 642 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A3P25940 MIR5195-201ENST00000583555 115 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A3P25940 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.86□□□□□ -1.63
COL5A3P25940 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A3P25940 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A3P25940 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A3P25940 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A3P25940 USP8P1-201ENST00000494673 3183 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A3P25940 AL121878.1-201ENST00000418638 859 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 CYCSP32-201ENST00000440548 321 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.86□□□□□ -1.63
COL5A3P25940 AL133244.1-201ENST00000456007 258 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
COL5A3P25940 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A3P25940 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.86□□□□□ -1.63
COL5A3P25940 AL392088.2-201ENST00000637607 285 ntBASIC4.86□□□□□ -1.63
COL5A3P25940 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL5A3P25940 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.86□□□□□ -1.63
COL5A3P25940 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
COL5A3P25940 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
COL5A3P25940 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A3P25940 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL5A3P25940 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.85□□□□□ -1.63
COL5A3P25940 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
COL5A3P25940 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms