Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 CR392039.4-201ENST00000624968 501 ntBASIC4.44□□□□□ -1.7
SSX4O60224 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.44□□□□□ -1.7
SSX4O60224 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.44□□□□□ -1.7
SSX4O60224 BX649567.1-201ENST00000642071 1134 ntBASIC4.44□□□□□ -1.7
SSX4O60224 AL353743.4-201ENST00000422653 1547 ntBASIC4.44□□□□□ -1.7
SSX4O60224 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 THAP12P4-201ENST00000528321 2266 ntBASIC4.44□□□□□ -1.7
SSX4O60224 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
SSX4O60224 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
SSX4O60224 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
SSX4O60224 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
SSX4O60224 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 MTCO1P6-201ENST00000481192 1384 ntBASIC4.43□□□□□ -1.7
SSX4O60224 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 RNU6-236P-201ENST00000363886 106 ntBASIC4.43□□□□□ -1.7
SSX4O60224 RPS24P12-201ENST00000402084 394 ntBASIC4.43□□□□□ -1.7
SSX4O60224 MTCO2P8-201ENST00000412213 658 ntBASIC4.43□□□□□ -1.7
SSX4O60224 LIPT1P1-201ENST00000415870 1186 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 OR5AW1P-201ENST00000426334 1006 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 AP001324.1-201ENST00000428553 399 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.43□□□□□ -1.7
SSX4O60224 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 RPS29P10-201ENST00000439197 166 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AL592437.1-201ENST00000443781 492 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AL606517.1-201ENST00000446914 387 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC093166.2-201ENST00000455969 1017 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC005008.1-201ENST00000456151 612 ntBASIC4.43□□□□□ -1.7
SSX4O60224 GYG1P1-201ENST00000460864 698 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC097484.1-201ENST00000471148 389 ntBASIC4.43□□□□□ -1.7
SSX4O60224 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 RPS4XP18-201ENST00000495480 763 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC023050.1-201ENST00000498198 304 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 TRAV31-201ENST00000502780 342 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.43□□□□□ -1.7
SSX4O60224 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.43□□□□□ -1.7
SSX4O60224 IGBP1P5-201ENST00000507524 1000 ntBASIC4.43□□□□□ -1.7
SSX4O60224 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 AC093752.1-206ENST00000511823 336 ntBASIC4.43□□□□□ -1.7
SSX4O60224 RN7SKP260-201ENST00000516907 149 ntBASIC4.43□□□□□ -1.7
SSX4O60224 RNU6-1028P-201ENST00000517164 93 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AF186190.1-201ENST00000517470 480 ntBASIC4.43□□□□□ -1.7
SSX4O60224 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.43□□□□□ -1.7
SSX4O60224 AP001207.2-201ENST00000519490 539 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 AC104417.1-201ENST00000523974 751 ntBASIC4.43□□□□□ -1.7
SSX4O60224 MORF4L1P3-201ENST00000525966 950 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC124293.1-201ENST00000530034 493 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 AC139103.1-201ENST00000534696 1030 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 MTCO1P40-201ENST00000574371 625 ntBASIC4.43□□□□□ -1.7
SSX4O60224 MIR4509-3-201ENST00000578671 94 ntBASIC4.43□□□□□ -1.7
SSX4O60224 MIR4509-2-201ENST00000583920 94 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 AC087783.2-201ENST00000605070 562 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.43□□□□□ -1.7
SSX4O60224 CYCSP41-201ENST00000616920 296 ntBASIC4.43□□□□□ -1.7
SSX4O60224 MIR4509-1-201ENST00000618224 94 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC009704.2-201ENST00000618739 483 ntBASIC4.43□□□□□ -1.7
SSX4O60224 AC092608.3-201ENST00000625017 386 ntBASIC4.43□□□□□ -1.7
SSX4O60224 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 AC135068.12-201ENST00000637370 931 ntBASIC4.43□□□□□ -1.7
SSX4O60224 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.43□□□□□ -1.7
SSX4O60224 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.43□□□□□ -1.7
SSX4O60224 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SSX4O60224 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.43□□□□□ -1.7
SSX4O60224 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
SSX4O60224 INTS6P1-201ENST00000504674 2530 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms