Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AK3P4-201ENST00000504283 583 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 SNORA58-201ENST00000505219 137 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC083906.1-201ENST00000509298 406 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 MTND3P22-201ENST00000510932 243 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 SEPT14P4-201ENST00000513445 186 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 FO082796.1-201ENST00000523795 183 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC022832.1-201ENST00000530718 645 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AP003115.1-201ENST00000569849 463 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RN7SL32P-201ENST00000580514 281 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 RPL26P30-202ENST00000602923 645 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC091133.5-201ENST00000603088 301 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC139493.1-201ENST00000604368 397 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC004241.2-201ENST00000614562 444 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC027559.1-201ENST00000636288 271 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC013488.1-201ENST00000526618 1838 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC025809.2-201ENST00000625085 1802 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AL591848.4-201ENST00000567832 3472 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 SAGE3P-201ENST00000619800 1635 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC140Q96MF4 CCDC150P1-201ENST00000537123 2215 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 AC107980.1-201ENST00000558671 3355 ntBASIC5.15□□□□□ -1.59
CCDC140Q96MF4 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL161901.1-201ENST00000624954 3425 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC011460.1-201ENST00000636268 1834 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC091046.3-201ENST00000631455 1574 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 SNORA69-201ENST00000383895 132 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RNU6-146P-201ENST00000384602 108 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RN7SKP240-201ENST00000410583 375 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC004987.3-201ENST00000413879 771 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 SNRPEP10-201ENST00000420249 274 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC113412.1-201ENST00000425840 504 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 MTND1P14-201ENST00000427400 950 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 GPR143P-201ENST00000434155 205 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC108734.1-201ENST00000439549 399 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC083855.1-201ENST00000440041 258 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC022080.2-201ENST00000452932 533 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC083798.1-201ENST00000472671 131 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RN7SL70P-201ENST00000478322 302 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC108693.1-201ENST00000496068 432 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RNA5SP401-201ENST00000515920 127 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 RNU6-941P-201ENST00000516346 108 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 IGLVVII-41-1-201ENST00000518405 151 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC112191.2-201ENST00000522428 333 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 SETP2-201ENST00000553886 926 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL109766.1-201ENST00000555080 552 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC098848.2-201ENST00000588023 330 ntBASIC5.14□□□□□ -1.59
CCDC140Q96MF4 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms