Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 IGHV3-32-201ENST00000519182 355 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 CR383656.6-201ENST00000550518 394 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 EIF1P5-201ENST00000585002 234 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC005242.1-201ENST00000585658 438 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC018618.2-201ENST00000604770 446 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AL359757.1-201ENST00000623176 255 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC112694.2-201ENST00000623697 768 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 ATE1-AS1-202ENST00000636460 506 ntBASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ZNF540Q8NDQ6 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 OR4K17-201ENST00000315543 1032 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 RNU6-98P-201ENST00000384173 107 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 LINC01347-201ENST00000417964 355 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 USP9YP7-201ENST00000436723 430 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 PSMD10P3-201ENST00000437000 448 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC114878.1-201ENST00000441166 358 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 CEACAMP6-201ENST00000452007 574 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 USP9YP32-201ENST00000452432 430 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 RPS3AP41-201ENST00000462701 778 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC012158.1-204ENST00000483430 465 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC083982.1-201ENST00000485679 344 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC090071.1-201ENST00000507713 644 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 NMNAT1P1-201ENST00000554095 876 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 MIR4480-201ENST00000582492 71 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC112503.1-201ENST00000608436 391 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC009237.17-201ENST00000618111 748 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AL669942.2-201ENST00000620352 697 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
ZNF540Q8NDQ6 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 RNA5SP123-201ENST00000363244 119 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 SNORA51.8-201ENST00000384234 132 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 DNAJC19P6-201ENST00000401853 280 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL357515.1-201ENST00000402967 542 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 RPS4XP9-201ENST00000405151 780 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AP002530.1-201ENST00000405705 684 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 COX6B1P1-201ENST00000415962 213 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 RPL21P43-201ENST00000425440 472 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 USP9YP9-201ENST00000429406 715 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AC000111.2-201ENST00000448200 210 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 AL121877.1-201ENST00000453704 622 ntBASIC4.34□□□□□ -1.71
ZNF540Q8NDQ6 snoU13.20-201ENST00000459180 104 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms