Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC092121.1-201ENST00000569452 202 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 RPL23AP87-202ENST00000573039 466 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC027796.1-201ENST00000575593 512 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 RN7SL32P-201ENST00000580514 281 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC024267.2-201ENST00000582737 417 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 MAGOH2P-202ENST00000584384 429 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 KLKP1-201ENST00000595979 403 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC010200.2-201ENST00000605098 235 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC016877.3-201ENST00000606778 504 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC004832.5-201ENST00000608677 401 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 MIR6891-201ENST00000618788 93 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AL121985.3-201ENST00000620690 523 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC025262.3-201ENST00000623666 360 ntBASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.43□□□□□ -2.02
LINC00643Q86TS7 AC106872.5-201ENST00000508856 1416 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC008264.2-201ENST00000610193 3731 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 MTND5P7-201ENST00000413558 1798 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL132640.2-201ENST00000559968 1698 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 MIR30E-201ENST00000362104 92 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RNA5SP234-201ENST00000363916 119 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RNA5SP122-201ENST00000384457 108 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 MIR3065-201ENST00000390137 79 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 GCNT1P4-201ENST00000404096 329 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL445189.1-201ENST00000405722 338 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RNU6ATAC18P-201ENST00000408413 101 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC093578.1-201ENST00000415219 368 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RPL7P46-201ENST00000425129 740 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 FAR1P1-201ENST00000427163 934 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AP000907.1-201ENST00000428428 510 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 CYCSP43-201ENST00000438233 310 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC105402.2-201ENST00000438503 358 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 HMGB1P37-201ENST00000439613 609 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RPS3AP46-201ENST00000448352 682 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AP006222.1-205ENST00000450734 457 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC068228.1-201ENST00000461723 211 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RPS29P19-201ENST00000479709 171 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RBBP4P1-201ENST00000502424 1276 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL390726.2-201ENST00000504791 343 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RN7SKP21-201ENST00000516503 220 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 CYCSP22-201ENST00000517555 339 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 IGHVII-44-2-201ENST00000517728 250 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 SMARCE1P4-201ENST00000523647 241 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC132192.1-201ENST00000531111 597 ntTSL 3 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 GNG2-208ENST00000554875 430 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC090877.1-201ENST00000561418 344 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 RN7SL230P-201ENST00000580835 303 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL591222.2-201ENST00000604443 754 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL451044.1-201ENST00000604867 238 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AP001437.1-201ENST00000608783 456 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC005156.1-201ENST00000613371 573 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC090246.1-201ENST00000616499 426 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC117503.3-201ENST00000623811 601 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC129778.1-202ENST00000623812 261 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AL591379.1-207ENST00000635982 261 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AMYH02020865.1-205ENST00000636189 261 ntBASIC2.42□□□□□ -2.02
LINC00643Q86TS7 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC2.42□□□□□ -2.02
LINC00643Q86TS7 AC092079.1-201ENST00000558620 1985 ntBASIC2.41□□□□□ -2.02
LINC00643Q86TS7 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.41□□□□□ -2.02
LINC00643Q86TS7 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms