Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AL592293.2-201ENST00000422292 996 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RPL19P16-201ENST00000433839 588 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC002542.1-201ENST00000440683 193 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 PRPF38AP1-201ENST00000451976 933 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC005229.2-201ENST00000456995 399 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC010618.1-201ENST00000469924 477 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RPS24P16-201ENST00000497294 392 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC008565.1-201ENST00000509046 885 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RNU6-276P-201ENST00000516114 96 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RNA5SP303-201ENST00000516192 130 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 NPM1P6-201ENST00000521088 871 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MORF4L1P3-201ENST00000525966 950 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 OR7E13P-201ENST00000526052 910 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 OR8I1P-201ENST00000529291 931 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC133555.2-201ENST00000550213 292 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MIR4509-3-201ENST00000578671 94 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MIR4509-2-201ENST00000583920 94 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RN7SL435P-201ENST00000584418 282 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC093227.2-201ENST00000589357 285 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 RPP40P2-201ENST00000603596 712 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC023813.4-201ENST00000607580 580 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC006946.3-201ENST00000609791 756 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MIR6716-201ENST00000613413 80 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MIR4509-1-201ENST00000618224 94 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC139769.3-201ENST00000618383 175 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AC139713.2-210ENST00000641741 992 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL28A1Q2UY09 TTC39DP-201ENST00000416781 1688 ntBASIC4.83□□□□□ -1.64
COL28A1Q2UY09 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 STX3-208ENST00000641815 3236 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 BX005019.1-201ENST00000561881 1810 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 U3.3-201ENST00000362986 216 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RNU6-549P-201ENST00000384433 107 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RNA5SP171-201ENST00000391071 115 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RPL7P27-201ENST00000403775 720 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 MIR1182-201ENST00000408363 97 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 MTCO2P23-201ENST00000425216 680 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC007559.1-201ENST00000428736 355 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 MTCO1P53-201ENST00000441633 699 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 Z95327.1-201ENST00000446082 482 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 CDC42P1-201ENST00000456658 548 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RPL6P9-201ENST00000466502 859 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RPL12P20-201ENST00000475538 479 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RPL7P41-201ENST00000485823 957 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RPS12P31-201ENST00000491419 398 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 GAPDHP56-201ENST00000506031 988 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC093840.1-201ENST00000511599 336 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC119751.1-201ENST00000513357 765 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 RNU6-1028P-201ENST00000517164 93 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 IGKV2-23-201ENST00000518729 323 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC068714.1-201ENST00000559623 800 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 ZNF971P-201ENST00000562068 1249 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AL049838.1-201ENST00000563647 981 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 EIF1P6-201ENST00000600054 334 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AL356218.2-201ENST00000605264 187 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.82□□□□□ -1.64
COL28A1Q2UY09 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms