Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.6□□□□□ -1.67
MSH3P20585 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 AC013437.2-201ENST00000639587 677 ntBASIC4.6□□□□□ -1.67
MSH3P20585 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.6□□□□□ -1.67
MSH3P20585 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.6□□□□□ -1.67
MSH3P20585 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 OR51H2P-202ENST00000641424 3046 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AC053481.2-202ENST00000582394 1500 ntBASIC4.6□□□□□ -1.67
MSH3P20585 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.6□□□□□ -1.67
MSH3P20585 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 AC007342.7-201ENST00000624610 2337 ntBASIC4.6□□□□□ -1.67
MSH3P20585 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.59□□□□□ -1.67
MSH3P20585 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.59□□□□□ -1.67
MSH3P20585 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.59□□□□□ -1.67
MSH3P20585 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSH3P20585 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSH3P20585 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSH3P20585 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
MSH3P20585 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 OR51B3P-201ENST00000412287 913 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AL445183.3-201ENST00000414168 502 ntBASIC4.59□□□□□ -1.67
MSH3P20585 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.59□□□□□ -1.67
MSH3P20585 TCEA1P2-201ENST00000420496 906 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC073310.1-201ENST00000423226 1033 ntBASIC4.59□□□□□ -1.67
MSH3P20585 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.59□□□□□ -1.67
MSH3P20585 MTCYBP12-201ENST00000440559 1134 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 RPL36AP15-201ENST00000444514 266 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 AC073587.1-201ENST00000447093 876 ntBASIC4.59□□□□□ -1.67
MSH3P20585 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
MSH3P20585 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.59□□□□□ -1.67
MSH3P20585 AC073264.2-201ENST00000448886 166 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC108463.1-201ENST00000450258 347 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 RPL21P18-201ENST00000469899 480 ntBASIC4.59□□□□□ -1.67
MSH3P20585 RPS17P11-201ENST00000474297 293 ntBASIC4.59□□□□□ -1.67
MSH3P20585 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 IGLV2-34-201ENST00000490007 283 ntBASIC4.59□□□□□ -1.67
MSH3P20585 RPS23P1-201ENST00000491662 432 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC108120.2-201ENST00000512973 294 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.59□□□□□ -1.67
MSH3P20585 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 RPL21P7-201ENST00000557463 483 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC106754.1-201ENST00000562632 1513 ntBASIC4.59□□□□□ -1.67
MSH3P20585 HMGB2P1-201ENST00000591146 634 ntBASIC4.59□□□□□ -1.67
MSH3P20585 LINC01109-201ENST00000603837 3081 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC025175.1-201ENST00000606482 759 ntBASIC4.59□□□□□ -1.67
MSH3P20585 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.59□□□□□ -1.67
MSH3P20585 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.59□□□□□ -1.67
MSH3P20585 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
MSH3P20585 AC084824.4-201ENST00000620106 731 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC004232.3-201ENST00000622977 525 ntBASIC4.59□□□□□ -1.67
MSH3P20585 AC008993.2-201ENST00000631744 806 ntBASIC4.59□□□□□ -1.67
MSH3P20585 MFSD8-213ENST00000641134 1327 ntBASIC4.59□□□□□ -1.67
MSH3P20585 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSH3P20585 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.59□□□□□ -1.67
MSH3P20585 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.59□□□□□ -1.68
MSH3P20585 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
MSH3P20585 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.58□□□□□ -1.68
MSH3P20585 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.58□□□□□ -1.68
MSH3P20585 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.58□□□□□ -1.68
MSH3P20585 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSH3P20585 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.58□□□□□ -1.68
MSH3P20585 AC108751.5-201ENST00000492880 1336 ntBASIC4.58□□□□□ -1.68
MSH3P20585 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSH3P20585 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
MSH3P20585 MIR585-201ENST00000384887 94 ntBASIC4.58□□□□□ -1.68
MSH3P20585 AC019050.1-201ENST00000418508 492 ntBASIC4.58□□□□□ -1.68
MSH3P20585 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.58□□□□□ -1.68
MSH3P20585 PNRC2P1-201ENST00000423940 420 ntBASIC4.58□□□□□ -1.68
MSH3P20585 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.58□□□□□ -1.68
MSH3P20585 AC114973.1-201ENST00000429057 632 ntBASIC4.58□□□□□ -1.68
MSH3P20585 AL359265.2-201ENST00000434367 631 ntBASIC4.58□□□□□ -1.68
MSH3P20585 Z80107.1-201ENST00000436830 412 ntBASIC4.58□□□□□ -1.68
MSH3P20585 MTND6P18-201ENST00000439477 513 ntBASIC4.58□□□□□ -1.68
MSH3P20585 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.58□□□□□ -1.68
MSH3P20585 RPL6P5-201ENST00000445678 828 ntBASIC4.58□□□□□ -1.68
MSH3P20585 HMGB1P38-201ENST00000490557 577 ntBASIC4.58□□□□□ -1.68
MSH3P20585 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.58□□□□□ -1.68
MSH3P20585 AC107918.3-201ENST00000533272 382 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms