Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR4660-201ENST00000583549 74 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AC005520.3-201ENST00000602874 370 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 RPS29P4-201ENST00000414733 161 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AC130352.1-201ENST00000602979 661 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AC136601.2-201ENST00000604356 474 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 AC090337.1-201ENST00000579651 2074 ntBASIC3.82□□□□□ -1.8
VPS13AQ96RL7 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS13AQ96RL7 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 CYCSP24-201ENST00000445119 316 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 CCRL1P1-201ENST00000449542 1053 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC027309.2-201ENST00000520566 192 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 RERGL-202ENST00000536890 367 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC027176.2-201ENST00000559166 746 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC068722.2-201ENST00000618734 544 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 SNORD96B-201ENST00000386148 79 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AL831737.1-201ENST00000441288 271 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 RPL12P22-201ENST00000519073 490 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC124068.1-201ENST00000563131 678 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC022655.2-201ENST00000577280 318 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 THAP12P5-201ENST00000405864 2275 ntBASIC3.81□□□□□ -1.8
VPS13AQ96RL7 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS13AQ96RL7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 SNORA38.1-201ENST00000364172 131 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 RBMY1KP-201ENST00000423480 476 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 EIF4A1P11-201ENST00000451239 222 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 OR52Y1P-201ENST00000452418 828 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AC133552.5-201ENST00000604266 540 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 UBA52P6-201ENST00000399822 382 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 MIR921-201ENST00000401133 56 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 VN1R32P-201ENST00000452234 905 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 AC119674.1-207ENST00000641355 633 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 MTCO1P46-201ENST00000451639 1491 ntBASIC3.8□□□□□ -1.8
VPS13AQ96RL7 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS13AQ96RL7 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS13AQ96RL7 MTND2P15-201ENST00000418575 892 ntBASIC3.79□□□□□ -1.8
VPS13AQ96RL7 AC087650.1-201ENST00000431445 468 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms