Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HPS3Q969F9 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
HPS3Q969F9 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HPS3Q969F9 SNORA17.1-201ENST00000362945 126 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 SNORD116.1-201ENST00000365628 92 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC013442.1-201ENST00000397347 228 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.63□□□□□ -1.51
HPS3Q969F9 SPTLC1P2-201ENST00000407089 121 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 RN7SKP273-201ENST00000411392 314 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AL139148.1-201ENST00000427122 680 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.63□□□□□ -1.51
HPS3Q969F9 SETP8-201ENST00000435341 628 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 OR6K5P-201ENST00000447050 945 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 HMGB1P16-201ENST00000447155 540 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AL389915.2-201ENST00000454576 441 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 RPL37P3-201ENST00000456825 293 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 RNU6-1218P-201ENST00000458990 108 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 PRDX3P4-201ENST00000470828 747 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AP000563.1-201ENST00000490865 758 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC005912.1-201ENST00000495392 255 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC138938.1-201ENST00000515431 782 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.63□□□□□ -1.51
HPS3Q969F9 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC004825.1-201ENST00000555068 586 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 BNIP3P24-201ENST00000593398 557 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
HPS3Q969F9 AC097478.2-201ENST00000610572 514 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC022079.1-201ENST00000621546 602 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AL157770.1-201ENST00000623049 439 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.63□□□□□ -1.51
HPS3Q969F9 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HPS3Q969F9 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
HPS3Q969F9 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
HPS3Q969F9 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 AP005901.5-201ENST00000545779 1796 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 AC009313.2-201ENST00000417893 1941 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
HPS3Q969F9 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
HPS3Q969F9 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.62□□□□□ -1.51
HPS3Q969F9 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.62□□□□□ -1.51
HPS3Q969F9 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HPS3Q969F9 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HPS3Q969F9 HMGB1P5-201ENST00000255320 642 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 FAM133CP-201ENST00000332869 704 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 SNORA58B-201ENST00000364259 136 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 RNU6-707P-201ENST00000364647 95 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HPS3Q969F9 Y_RNA.465-201ENST00000384293 102 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 SNORA70-201ENST00000384436 135 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 GSTM3P2-201ENST00000412746 530 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AC234782.4-201ENST00000417646 1048 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 DYNLL1P7-201ENST00000429273 258 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 PPIAP13-201ENST00000434706 478 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC5.62□□□□□ -1.51
HPS3Q969F9 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.62□□□□□ -1.51
HPS3Q969F9 RN7SL515P-201ENST00000463999 297 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 RN7SL443P-201ENST00000464331 290 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AC011979.1-201ENST00000472300 483 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AC090114.3-201ENST00000479267 829 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC5.62□□□□□ -1.51
HPS3Q969F9 AC010350.1-201ENST00000504908 231 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 AC118465.1-201ENST00000513820 1271 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 OR10G5P-201ENST00000532733 358 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.62□□□□□ -1.51
HPS3Q969F9 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.62□□□□□ -1.51
HPS3Q969F9 AGGF1P6-201ENST00000569213 976 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 MIR3691-201ENST00000578066 90 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 AC127024.5-201ENST00000580085 462 ntBASIC5.62□□□□□ -1.51
HPS3Q969F9 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms