Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 HSPD1P16-201ENST00000402302 394 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 MIR1179-201ENST00000408703 91 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.79□□□□□ -1.8
H3F3AP84243 RNA5SP36-201ENST00000410197 133 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.79□□□□□ -1.8
H3F3AP84243 RPS23P10-201ENST00000416185 486 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.79□□□□□ -1.8
H3F3AP84243 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC3.79□□□□□ -1.8
H3F3AP84243 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.79□□□□□ -1.8
H3F3AP84243 EEF1A1P1-201ENST00000447052 739 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 AC009220.1-201ENST00000451614 275 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC3.79□□□□□ -1.8
H3F3AP84243 AC006499.6-201ENST00000511169 607 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 KCTD9P2-201ENST00000512203 1013 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.79□□□□□ -1.8
H3F3AP84243 RNA5SP519-201ENST00000516480 119 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.79□□□□□ -1.8
H3F3AP84243 IGLV3-26-201ENST00000520756 302 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
H3F3AP84243 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.79□□□□□ -1.8
H3F3AP84243 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.79□□□□□ -1.8
H3F3AP84243 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.79□□□□□ -1.8
H3F3AP84243 AF230666.2-201ENST00000602328 725 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.79□□□□□ -1.8
H3F3AP84243 AC138907.10-201ENST00000623708 983 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC3.79□□□□□ -1.8
H3F3AP84243 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.79□□□□□ -1.8
H3F3AP84243 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC3.79□□□□□ -1.8
H3F3AP84243 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
H3F3AP84243 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
H3F3AP84243 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
H3F3AP84243 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
H3F3AP84243 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
H3F3AP84243 BX005019.1-201ENST00000561881 1810 ntBASIC3.79□□□□□ -1.8
H3F3AP84243 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
H3F3AP84243 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
H3F3AP84243 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
H3F3AP84243 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.78□□□□□ -1.8
H3F3AP84243 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 RNA5SP443-201ENST00000363083 132 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 SNORA81-201ENST00000408493 178 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 RPL23AP26-201ENST00000412728 464 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.78□□□□□ -1.8
H3F3AP84243 MTND4LP13-201ENST00000425022 298 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 BTF3P10-201ENST00000433415 495 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 AC073143.1-201ENST00000436316 395 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.78□□□□□ -1.8
H3F3AP84243 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.78□□□□□ -1.8
H3F3AP84243 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.78□□□□□ -1.8
H3F3AP84243 AC106806.2-201ENST00000509365 500 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 AC099522.1-202ENST00000514718 367 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 HNRNPKP5-201ENST00000515300 253 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC3.78□□□□□ -1.8
H3F3AP84243 AC018552.3-201ENST00000567416 561 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.78□□□□□ -1.8
H3F3AP84243 AL445567.2-201ENST00000618935 498 ntBASIC3.78□□□□□ -1.8
H3F3AP84243 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.78□□□□□ -1.8
H3F3AP84243 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.78□□□□□ -1.8
H3F3AP84243 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
H3F3AP84243 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
H3F3AP84243 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
H3F3AP84243 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
H3F3AP84243 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
H3F3AP84243 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.77□□□□□ -1.81
H3F3AP84243 MIR141-201ENST00000384975 95 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AL161909.1-201ENST00000397390 712 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AL035696.2-201ENST00000407941 709 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 RN7SKP182-201ENST00000410772 298 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AC016397.1-201ENST00000412463 242 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.77□□□□□ -1.81
H3F3AP84243 SEC63P1-201ENST00000425785 1258 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 MAPRE1P3-201ENST00000435438 796 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.77□□□□□ -1.81
H3F3AP84243 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.77□□□□□ -1.81
H3F3AP84243 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.77□□□□□ -1.81
H3F3AP84243 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 RNA5SP246-201ENST00000458909 119 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 UQCRHP4-201ENST00000471686 272 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 SYT14P1-201ENST00000481459 721 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 CEACAMP10-202ENST00000495431 496 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AC146944.2-203ENST00000502493 354 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 PARP4P3-201ENST00000510265 317 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.77□□□□□ -1.81
H3F3AP84243 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
H3F3AP84243 AC139495.1-202ENST00000513164 354 ntBASIC3.77□□□□□ -1.81
H3F3AP84243 AP003730.1-201ENST00000524605 285 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms