Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 AL359697.1-201ENST00000624879 587 ntBASIC5.81□□□□□ -1.48
RNF4P78317 AP003400.3-201ENST00000624904 346 ntBASIC5.81□□□□□ -1.48
RNF4P78317 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
RNF4P78317 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.81□□□□□ -1.48
RNF4P78317 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
RNF4P78317 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.81□□□□□ -1.48
RNF4P78317 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.81□□□□□ -1.48
RNF4P78317 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF4P78317 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
RNF4P78317 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AC024651.2-201ENST00000562480 2098 ntBASIC5.8□□□□□ -1.48
RNF4P78317 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 RNU6-251P-201ENST00000363235 104 ntBASIC5.8□□□□□ -1.48
RNF4P78317 RNU1-49P-201ENST00000363468 159 ntBASIC5.8□□□□□ -1.48
RNF4P78317 RNU6-289P-201ENST00000364093 107 ntBASIC5.8□□□□□ -1.48
RNF4P78317 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 RN7SKP144-201ENST00000411108 279 ntBASIC5.8□□□□□ -1.48
RNF4P78317 ALDH7A1P4-201ENST00000412255 178 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC234782.4-201ENST00000417646 1048 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC004690.1-201ENST00000418216 328 ntBASIC5.8□□□□□ -1.48
RNF4P78317 MRPS21P2-201ENST00000424704 264 ntBASIC5.8□□□□□ -1.48
RNF4P78317 RWDD4P2-201ENST00000426392 563 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 ISCA1P6-201ENST00000427740 390 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 SKP1P1-201ENST00000438081 489 ntBASIC5.8□□□□□ -1.48
RNF4P78317 PPIAP10-201ENST00000438675 458 ntBASIC5.8□□□□□ -1.48
RNF4P78317 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 H3F3BP1-201ENST00000440551 403 ntBASIC5.8□□□□□ -1.48
RNF4P78317 RPL5P7-201ENST00000444235 813 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 AL118496.2-201ENST00000448300 230 ntBASIC5.8□□□□□ -1.48
RNF4P78317 RPS23P9-201ENST00000448848 438 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC079448.1-201ENST00000449377 373 ntBASIC5.8□□□□□ -1.48
RNF4P78317 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 MTCO1P42-201ENST00000457379 726 ntBASIC5.8□□□□□ -1.48
RNF4P78317 RPL7AP52-201ENST00000458096 790 ntBASIC5.8□□□□□ -1.48
RNF4P78317 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 AC106872.3-201ENST00000495104 446 ntBASIC5.8□□□□□ -1.48
RNF4P78317 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 AC084121.1-201ENST00000533882 835 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 AC002519.2-203ENST00000567043 837 ntBASIC5.8□□□□□ -1.48
RNF4P78317 MIR4502-201ENST00000580432 81 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AP001180.3-201ENST00000582221 145 ntBASIC5.8□□□□□ -1.48
RNF4P78317 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AC104785.1-201ENST00000603220 588 ntBASIC5.8□□□□□ -1.48
RNF4P78317 SUGT1P3-202ENST00000604259 383 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC091193.1-201ENST00000604640 448 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF4P78317 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.8□□□□□ -1.48
RNF4P78317 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.8□□□□□ -1.48
RNF4P78317 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 AP001052.1-201ENST00000626421 99 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC073488.6-201ENST00000632293 754 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
RNF4P78317 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
RNF4P78317 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 FARSBP1-201ENST00000435808 1778 ntBASIC5.8□□□□□ -1.48
RNF4P78317 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 AL355488.2-201ENST00000609909 2850 ntBASIC5.8□□□□□ -1.48
RNF4P78317 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.8□□□□□ -1.48
RNF4P78317 AC011369.2-201ENST00000624423 1567 ntBASIC5.8□□□□□ -1.48
RNF4P78317 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF4P78317 CDC27P2-201ENST00000425026 1922 ntBASIC5.8□□□□□ -1.48
RNF4P78317 AC025125.1-201ENST00000624743 1922 ntBASIC5.8□□□□□ -1.48
RNF4P78317 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RNF4P78317 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms