Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 SNORD35B-201ENST00000363660 87 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AL591419.1-201ENST00000427423 339 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AC073335.1-201ENST00000427776 363 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.19□□□□□ -1.58
COL18A1P39060 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.19□□□□□ -1.58
COL18A1P39060 HSPD1P21-201ENST00000436541 245 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL18A1P39060 NPM1P28-201ENST00000492269 840 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AL358832.1-201ENST00000497800 389 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.19□□□□□ -1.58
COL18A1P39060 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC5.19□□□□□ -1.58
COL18A1P39060 OR8I1P-201ENST00000529291 931 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.19□□□□□ -1.58
COL18A1P39060 AC005972.3-201ENST00000606304 481 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 PRO1804-201ENST00000623780 2050 ntBASIC5.19□□□□□ -1.58
COL18A1P39060 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL18A1P39060 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL18A1P39060 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL18A1P39060 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.18□□□□□ -1.58
COL18A1P39060 VN1R8P-201ENST00000407739 893 ntBASIC5.18□□□□□ -1.58
COL18A1P39060 SNORA3.3-201ENST00000408712 125 ntBASIC5.18□□□□□ -1.58
COL18A1P39060 BOLA3P4-201ENST00000418151 400 ntBASIC5.18□□□□□ -1.58
COL18A1P39060 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.18□□□□□ -1.58
COL18A1P39060 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.18□□□□□ -1.58
COL18A1P39060 AC007458.1-201ENST00000542812 373 ntBASIC5.18□□□□□ -1.58
COL18A1P39060 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.18□□□□□ -1.58
COL18A1P39060 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL18A1P39060 AP002001.2-201ENST00000529025 1469 ntBASIC5.18□□□□□ -1.58
COL18A1P39060 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.18□□□□□ -1.58
COL18A1P39060 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL18A1P39060 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL18A1P39060 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.17□□□□□ -1.58
COL18A1P39060 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
COL18A1P39060 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.17□□□□□ -1.58
COL18A1P39060 RNA5SP72-201ENST00000364442 117 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 MIR34B-201ENST00000385076 84 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.17□□□□□ -1.58
COL18A1P39060 NPM1P36-201ENST00000415681 835 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.17□□□□□ -1.58
COL18A1P39060 HSFY1P1-201ENST00000423928 1178 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.17□□□□□ -1.58
COL18A1P39060 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.17□□□□□ -1.58
COL18A1P39060 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
COL18A1P39060 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.17□□□□□ -1.58
COL18A1P39060 RN7SKP18-201ENST00000516005 275 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 DUX4L52-201ENST00000549363 777 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.17□□□□□ -1.58
COL18A1P39060 MIR4472-2-201ENST00000582069 67 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 AC020914.6-201ENST00000594327 272 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 AL031666.3-201ENST00000609320 1006 ntBASIC5.17□□□□□ -1.58
COL18A1P39060 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL18A1P39060 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
COL18A1P39060 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL18A1P39060 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL18A1P39060 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.17□□□□□ -1.58
COL18A1P39060 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.17□□□□□ -1.58
COL18A1P39060 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL18A1P39060 ATP5A1P2-201ENST00000412323 255 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 RPS4XP10-201ENST00000465034 731 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 WBP1LP4-201ENST00000505043 344 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 RN7SKP13-201ENST00000515933 244 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AL137849.1-201ENST00000604767 169 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AC243654.2-201ENST00000612843 443 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AC023509.5-201ENST00000617434 807 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AC055839.1-201ENST00000634467 498 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.16□□□□□ -1.58
COL18A1P39060 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.16□□□□□ -1.58
COL18A1P39060 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL18A1P39060 RNU2-65P-201ENST00000410162 185 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.16□□□□□ -1.58
COL18A1P39060 HIGD1AP4-201ENST00000430194 280 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC5.16□□□□□ -1.58
COL18A1P39060 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.16□□□□□ -1.58
COL18A1P39060 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.16□□□□□ -1.58
COL18A1P39060 AC124312.6-202ENST00000623624 418 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 AL137918.1-201ENST00000624542 1922 ntBASIC5.16□□□□□ -1.58
COL18A1P39060 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL18A1P39060 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.15□□□□□ -1.58
COL18A1P39060 AL138820.1-201ENST00000617901 5305 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL18A1P39060 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL18A1P39060 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.15□□□□□ -1.58
COL18A1P39060 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL18A1P39060 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL18A1P39060 RPL7P60-201ENST00000397636 735 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 RN7SKP177-201ENST00000410567 355 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 AC096664.2-201ENST00000411843 406 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.15□□□□□ -1.58
COL18A1P39060 AC025554.1-201ENST00000505641 188 ntBASIC5.15□□□□□ -1.58
COL18A1P39060 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.15□□□□□ -1.58
COL18A1P39060 AC027807.1-201ENST00000559921 996 ntBASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms