Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HPRT1P1-201ENST00000509498 657 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 IFITM8P-201ENST00000522529 394 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.23□□□□□ -1.73
SHMT2P34897 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 SULT1C2P2-201ENST00000562517 294 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC021483.2-201ENST00000567415 758 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 RPL23AP97-201ENST00000568955 471 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.23□□□□□ -1.73
SHMT2P34897 AC245128.3-201ENST00000594721 748 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AL031666.3-201ENST00000609320 1006 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 MIR378J-201ENST00000611988 109 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC016911.1-201ENST00000613297 452 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AL138721.1-201ENST00000616756 179 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.23□□□□□ -1.73
SHMT2P34897 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
SHMT2P34897 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.23□□□□□ -1.73
SHMT2P34897 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SHMT2P34897 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SHMT2P34897 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.22□□□□□ -1.73
SHMT2P34897 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.22□□□□□ -1.73
SHMT2P34897 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
SHMT2P34897 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
SHMT2P34897 AC087190.4-201ENST00000574616 8334 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SHMT2P34897 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.22□□□□□ -1.73
SHMT2P34897 RNU6-984P-201ENST00000363236 109 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SHMT2P34897 AL139095.3-201ENST00000419672 1203 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.22□□□□□ -1.73
SHMT2P34897 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.22□□□□□ -1.73
SHMT2P34897 C4BPAP2-201ENST00000428434 478 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.22□□□□□ -1.73
SHMT2P34897 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHMT2P34897 RPS3AP54-201ENST00000435535 734 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 RSL24D1P2-201ENST00000445584 366 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 PGBD4P4-201ENST00000509673 613 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.22□□□□□ -1.73
SHMT2P34897 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 AC018442.3-201ENST00000523025 183 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 OR5BC1P-201ENST00000529327 739 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AL352979.3-201ENST00000553515 247 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 SNX6P1-201ENST00000601728 1224 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AC079791.1-201ENST00000605356 973 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.22□□□□□ -1.73
SHMT2P34897 AL021997.2-201ENST00000615674 271 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 AL356274.1-201ENST00000617064 410 ntBASIC4.22□□□□□ -1.73
SHMT2P34897 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.22□□□□□ -1.73
SHMT2P34897 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.22□□□□□ -1.73
SHMT2P34897 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.22□□□□□ -1.73
SHMT2P34897 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHMT2P34897 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
SHMT2P34897 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.22□□□□□ -1.73
SHMT2P34897 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHMT2P34897 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.21□□□□□ -1.73
SHMT2P34897 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.21□□□□□ -1.73
SHMT2P34897 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.73
SHMT2P34897 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.21□□□□□ -1.74
SHMT2P34897 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.21□□□□□ -1.74
SHMT2P34897 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SHMT2P34897 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.21□□□□□ -1.74
SHMT2P34897 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SHMT2P34897 SNORA62-201ENST00000365493 153 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 RNU6-152P-201ENST00000384037 107 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 ST13P16-201ENST00000401760 781 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 HSPD1P16-201ENST00000402302 394 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 RNA5SP104-201ENST00000410989 118 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AL590609.2-201ENST00000421430 368 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AL356806.1-201ENST00000422524 916 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 RPL23AP52-201ENST00000439311 478 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 ARL5AP3-201ENST00000439327 386 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AL606490.8-201ENST00000441624 319 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AL512326.1-201ENST00000443050 721 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 TPT1P12-201ENST00000448968 492 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 RPL35AP15-201ENST00000468042 339 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AC037198.2-201ENST00000478845 733 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.21□□□□□ -1.74
SHMT2P34897 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.21□□□□□ -1.74
SHMT2P34897 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.21□□□□□ -1.74
SHMT2P34897 AC106806.2-201ENST00000509365 500 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SHMT2P34897 NDUFB4P12-201ENST00000513465 390 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AC092593.2-201ENST00000513866 913 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.21□□□□□ -1.74
SHMT2P34897 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SHMT2P34897 PSMB7P1-201ENST00000556349 514 ntBASIC4.21□□□□□ -1.74
SHMT2P34897 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.21□□□□□ -1.74
SHMT2P34897 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms