Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNRPEP7-201ENST00000438350 220 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC6.08□□□□□ -1.44
COL8A1P27658 HSPE1P22-201ENST00000456856 327 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 RNU6-1132P-201ENST00000459214 107 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC124945.1-201ENST00000485133 188 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 RPS4XP14-201ENST00000493072 781 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC097473.1-201ENST00000508142 408 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 RN7SKP24-201ENST00000515888 284 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC6.08□□□□□ -1.44
COL8A1P27658 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC6.08□□□□□ -1.44
COL8A1P27658 AC005519.1-201ENST00000554490 601 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.08□□□□□ -1.44
COL8A1P27658 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.08□□□□□ -1.44
COL8A1P27658 GLYATL1P2-202ENST00000588046 902 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 AC130324.3-201ENST00000614165 542 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AC018926.3-201ENST00000618841 406 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 MIR8062-201ENST00000621515 85 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 ATM-230ENST00000640388 578 ntTSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 MIR193BHG-214ENST00000641765 509 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 AC093297.3-201ENST00000607056 2517 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 AL157831.2-201ENST00000564681 3095 ntBASIC6.08□□□□□ -1.44
COL8A1P27658 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.08□□□□□ -1.44
COL8A1P27658 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL8A1P27658 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL8A1P27658 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 TMCC1P1-201ENST00000518897 1980 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC6.07□□□□□ -1.44
COL8A1P27658 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.07□□□□□ -1.44
COL8A1P27658 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC6.07□□□□□ -1.44
COL8A1P27658 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL8A1P27658 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL8A1P27658 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.07□□□□□ -1.44
COL8A1P27658 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 AL359396.1-201ENST00000623151 2376 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
COL8A1P27658 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.07□□□□□ -1.44
COL8A1P27658 RNA5SP140-201ENST00000364524 92 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 Y_RNA.373-201ENST00000365600 103 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 RN7SKP81-201ENST00000365603 331 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 SNORD37.1-201ENST00000390968 65 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 RNU6-954P-201ENST00000411355 107 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 BOLA3P4-201ENST00000418151 400 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 PGBD4P6-201ENST00000421501 610 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC079355.1-201ENST00000421770 223 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL8A1P27658 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC6.07□□□□□ -1.44
COL8A1P27658 RPL21P110-201ENST00000433345 446 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC6.07□□□□□ -1.44
COL8A1P27658 CXCR2P1-202ENST00000443392 1074 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 DDX3P2-201ENST00000446138 111 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.07□□□□□ -1.44
COL8A1P27658 MGAT2P1-201ENST00000449718 797 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 HMGB1P15-201ENST00000453854 435 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL8A1P27658 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC6.07□□□□□ -1.44
COL8A1P27658 RN7SL174P-201ENST00000475578 289 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 RPL32P9-201ENST00000487963 407 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 AK3P4-201ENST00000504283 583 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC6.07□□□□□ -1.44
COL8A1P27658 RNU6-138P-201ENST00000515952 107 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 RNU6-1023P-201ENST00000516137 106 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 RNA5SP92-201ENST00000516437 110 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 NARSP2-201ENST00000518524 679 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC022616.6-201ENST00000520479 119 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC6.07□□□□□ -1.44
COL8A1P27658 AC092332.1-201ENST00000563684 829 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 MIR4437-201ENST00000581331 60 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AF038458.1-201ENST00000588406 262 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 SMIM12P1-201ENST00000603004 274 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC104695.3-201ENST00000604052 296 ntBASIC6.07□□□□□ -1.44
COL8A1P27658 AC007255.2-201ENST00000604053 631 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms