Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC4P09017 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC4P09017 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC4P09017 FAM106CP-201ENST00000582212 507 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC4P09017 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC4P09017 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC4P09017 AC019278.1-201ENST00000623516 479 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 BMS1P21-201ENST00000634565 365 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 AC091046.3-201ENST00000631455 1574 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 MFSD8-220ENST00000641243 1422 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC4P09017 AC015813.6-201ENST00000624409 5808 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXC4P09017 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXC4P09017 MIR195-201ENST00000385194 87 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 RPS27AP11-201ENST00000402798 447 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 MIR1911-201ENST00000410783 80 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 EIF4A1P3-201ENST00000411521 244 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 RCC2P2-201ENST00000422174 918 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC4P09017 PTMAP3-201ENST00000447474 330 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 RAB28P3-201ENST00000448325 597 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC4P09017 AL133244.1-201ENST00000456007 258 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC4P09017 AC010469.1-201ENST00000463864 576 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AL672167.3-201ENST00000465951 960 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AC104164.2-201ENST00000496953 495 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC4P09017 BNIP3P41-201ENST00000503774 571 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXC4P09017 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC4P09017 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 AC084033.1-201ENST00000550830 633 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 BNIP3P5-201ENST00000562290 498 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC4P09017 RN7SL600P-201ENST00000581811 299 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC4P09017 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXC4P09017 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC4P09017 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC4P09017 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXC4P09017 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 AC012020.1-201ENST00000624541 1728 ntBASIC4.2□□□□□ -1.74
HOXC4P09017 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC4P09017 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC4P09017 OR10AB1P-202ENST00000641219 1686 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
HOXC4P09017 HSPA8P17-201ENST00000427029 1382 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC4P09017 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC4P09017 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC4P09017 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC4P09017 RNA5SP502-201ENST00000362694 119 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 SNORD96B-201ENST00000386148 79 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 SNORD66.1-201ENST00000391230 76 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RNA5SP317-201ENST00000410176 116 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RN7SKP33-201ENST00000410942 340 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RNA5SP311-201ENST00000411290 116 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXC4P09017 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC4P09017 MTND4LP13-201ENST00000425022 298 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 COX6B1P7-201ENST00000430845 235 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC4P09017 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC4P09017 HSFY6P-201ENST00000445573 403 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RPS27AP15-201ENST00000447672 466 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 ABCF2P2-201ENST00000450549 296 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 AC105918.1-201ENST00000474399 838 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RN7SL41P-201ENST00000476144 297 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 STRADBP1-201ENST00000478954 1281 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 AP000926.3-201ENST00000497201 299 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC4P09017 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC4P09017 STMN1P2-201ENST00000508435 439 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
HOXC4P09017 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 MTCO1P35-201ENST00000515270 228 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RNA5SP315-201ENST00000516340 116 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 RNA5SP312-201ENST00000517068 116 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 PHBP17-201ENST00000528576 541 ntBASIC4.19□□□□□ -1.74
HOXC4P09017 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC4P09017 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms