Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CLDN3O15551 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CLDN3O15551 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLDN3O15551 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.75□□□□□ -1.65
CLDN3O15551 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.75□□□□□ -1.65
CLDN3O15551 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLDN3O15551 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLDN3O15551 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CLDN3O15551 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CLDN3O15551 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CLDN3O15551 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 AC097374.1-203ENST00000400783 485 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AC004690.1-201ENST00000418216 328 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 EIF1P3-201ENST00000423841 334 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 MTCO3P21-201ENST00000430791 643 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 RPEP2-201ENST00000432149 701 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AL353597.2-202ENST00000434901 373 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AL512326.1-201ENST00000443050 721 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.74□□□□□ -1.65
CLDN3O15551 AL157827.1-201ENST00000447622 132 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 TPT1P12-201ENST00000448968 492 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.74□□□□□ -1.65
CLDN3O15551 APOOP2-201ENST00000461561 539 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AC012158.1-204ENST00000483430 465 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.74□□□□□ -1.65
CLDN3O15551 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 RNU6-347P-201ENST00000516658 105 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 RNU6-1308P-201ENST00000516817 103 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.74□□□□□ -1.65
CLDN3O15551 PDCD5P1-201ENST00000543528 309 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.74□□□□□ -1.65
CLDN3O15551 AL352979.3-201ENST00000553515 247 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.74□□□□□ -1.65
CLDN3O15551 AC022884.3-201ENST00000579571 248 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AP004372.1-201ENST00000604842 844 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.74□□□□□ -1.65
CLDN3O15551 AC009704.2-201ENST00000618739 483 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AP000843.1-201ENST00000624880 701 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 AL139254.3-201ENST00000641097 674 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 AL158163.1-201ENST00000603915 1649 ntBASIC4.74□□□□□ -1.65
CLDN3O15551 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.74□□□□□ -1.65
CLDN3O15551 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLDN3O15551 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLDN3O15551 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLDN3O15551 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLDN3O15551 FAM3C2-201ENST00000312214 681 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 RNU6-666P-201ENST00000363499 107 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 RNA5SP22-201ENST00000365393 109 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC019155.1-201ENST00000382242 574 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 RNU6-31P-201ENST00000384388 108 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 RNU6-603P-201ENST00000411403 107 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 PDSS1P1-201ENST00000422953 1114 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.73□□□□□ -1.65
CLDN3O15551 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 MTCYBP12-201ENST00000440559 1134 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.73□□□□□ -1.65
CLDN3O15551 RNU7-27P-201ENST00000459281 62 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 RNU6-775P-201ENST00000459318 96 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC109327.1-201ENST00000471666 403 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC010374.1-201ENST00000503762 1237 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 TRAV8-5-201ENST00000537369 341 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLDN3O15551 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.73□□□□□ -1.65
CLDN3O15551 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.73□□□□□ -1.65
CLDN3O15551 NPM1P47-201ENST00000560843 856 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC018552.3-201ENST00000567416 561 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AL354984.3-201ENST00000604803 325 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC005962.2-201ENST00000611427 652 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC116447.1-201ENST00000613153 453 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 AC023509.5-201ENST00000617434 807 ntBASIC4.73□□□□□ -1.65
CLDN3O15551 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.73□□□□□ -1.65
CLDN3O15551 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CLDN3O15551 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CLDN3O15551 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLDN3O15551 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.73□□□□□ -1.65
CLDN3O15551 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLDN3O15551 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLDN3O15551 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CLDN3O15551 OR51C1P-202ENST00000641159 1444 ntBASIC4.72□□□□□ -1.65
CLDN3O15551 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CLDN3O15551 AC090971.4-201ENST00000560291 1800 ntBASIC4.72□□□□□ -1.65
CLDN3O15551 AC010329.2-201ENST00000595195 2737 ntBASIC4.72□□□□□ -1.65
CLDN3O15551 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CLDN3O15551 RNU1-132P-201ENST00000364300 164 ntBASIC4.72□□□□□ -1.65
CLDN3O15551 RNA5SP366-201ENST00000365454 123 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms