Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 RNU6-1013P-201ENST00000384180 107 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 RNU6-831P-201ENST00000384548 107 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 RNU2-39P-201ENST00000410604 198 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 Y_RNA.615-201ENST00000410769 117 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 GSTM3P2-201ENST00000412746 530 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 CHIAP3-201ENST00000423668 1133 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC096632.1-201ENST00000427395 310 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC104698.1-201ENST00000435671 276 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC010878.1-201ENST00000456500 1047 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 RPL23P10-201ENST00000468780 412 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC021146.2-201ENST00000504736 556 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SNORD27.1-201ENST00000516319 72 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 MRPS16P1-201ENST00000523462 412 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SETP2-201ENST00000553886 926 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC053481.3-201ENST00000577881 843 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AL391813.2-201ENST00000609113 322 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC243654.2-201ENST00000612843 443 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 RN7SL261P-201ENST00000613441 282 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AC084781.2-201ENST00000615568 161 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 CR392039.4-201ENST00000624968 501 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AP003175.1-201ENST00000641383 6658 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 AL359263.1-201ENST00000441188 2796 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 MTND5P33-201ENST00000571250 1450 ntBASIC7.24□□□□□ -1.25
LIMD1Q9UGP4 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC097714.1-201ENST00000511272 1647 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 OR2AH1P-202ENST00000641232 2744 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 MTCO1P12-201ENST00000414273 1543 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AL117339.4-201ENST00000608335 7063 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RNU1-55P-201ENST00000365510 158 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 Y_RNA.395-201ENST00000383945 109 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RNU6-196P-201ENST00000384315 107 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC016769.3-201ENST00000396562 315 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AL359634.1-202ENST00000404721 284 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RPS20P5-201ENST00000434808 360 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC114495.1-201ENST00000441274 436 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 OR7E116P-201ENST00000448529 957 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 HMGB1P15-201ENST00000453854 435 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 PSPC1P2-201ENST00000455130 225 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC006512.1-201ENST00000468816 291 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 GLRXP3-201ENST00000470810 321 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RN7SL654P-201ENST00000479178 292 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AK3P4-201ENST00000504283 583 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 HMGB3P15-201ENST00000507326 574 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC005741.1-201ENST00000511094 432 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RPL29P33-201ENST00000587474 316 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 POLR3GP2-201ENST00000588366 668 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC068790.3-201ENST00000602988 553 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RPL23AP92-201ENST00000603609 255 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 MIR6862-1-201ENST00000613016 70 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AL352984.2-202ENST00000613699 155 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 MIR6862-2-201ENST00000614755 70 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 MIR6721-201ENST00000617181 87 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 ARHGAP42P4-201ENST00000549782 2934 ntBASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIMD1Q9UGP4 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms