Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 HMGB1P21-201ENST00000502313 581 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 FTH1P24-201ENST00000503502 462 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC007016.1-201ENST00000512110 244 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC134698.5-201ENST00000519444 336 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AP002812.4-201ENST00000532139 286 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC051619.2-201ENST00000559063 397 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC103792.1-201ENST00000603591 919 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AL031320.1-201ENST00000604177 357 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC010680.4-201ENST00000605334 543 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC016911.1-201ENST00000613297 452 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC107308.1-201ENST00000615897 301 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 MIR6853-201ENST00000619642 74 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC079298.2-201ENST00000623885 459 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS39Q96JC1 AL133243.3-201ENST00000617415 3004 ntBASIC4.54□□□□□ -1.68
VPS39Q96JC1 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC017104.4-201ENST00000636283 1592 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AL133412.1-201ENST00000380194 2992 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AL078604.1-201ENST00000404609 466 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 ATG4AP1-201ENST00000416893 538 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 MTND2P15-201ENST00000418575 892 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 CENPIP1-201ENST00000425713 902 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 RPL31P44-201ENST00000447680 377 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 RPL7P61-201ENST00000451721 751 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 VN1R32P-201ENST00000452234 905 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 RNU6-760P-201ENST00000516078 97 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 RN7SKP82-201ENST00000516786 223 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 MIR3934-201ENST00000579806 107 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC073091.2-201ENST00000603205 907 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC098935.2-201ENST00000604222 466 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AC010201.1-201ENST00000605051 540 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 BX322635.1-201ENST00000605804 496 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 AL021707.7-201ENST00000607991 416 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 MFSD8-242ENST00000641690 4199 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VPS39Q96JC1 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS39Q96JC1 NXPH1-205ENST00000602349 1953 ntBASIC4.53□□□□□ -1.68
VPS39Q96JC1 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.53□□□□□ -1.69
VPS39Q96JC1 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
VPS39Q96JC1 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 KARSP3-201ENST00000571212 1504 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 MTND4P31-201ENST00000425607 1343 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC138393.1-206ENST00000540997 1886 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 AL590240.1-201ENST00000334118 313 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 AC083799.1-201ENST00000366451 910 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 RNU1-44P-201ENST00000384453 163 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS39Q96JC1 RNA5SP146-201ENST00000410743 123 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 RANP4-201ENST00000413361 655 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS39Q96JC1 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 LINC01881-201ENST00000416103 412 ntBASIC4.52□□□□□ -1.69
VPS39Q96JC1 RPS12P23-201ENST00000419579 400 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms