Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC2.83□□□□□ -1.96
PRKDCP78527 AL592291.1-201ENST00000403830 352 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC2.83□□□□□ -1.96
PRKDCP78527 PHBP14-201ENST00000512887 367 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 STX3-204ENST00000530221 534 ntTSL 5 BASIC2.83□□□□□ -1.96
PRKDCP78527 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
PRKDCP78527 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC2.83□□□□□ -1.96
PRKDCP78527 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC2.83□□□□□ -1.96
PRKDCP78527 AL669831.5-218ENST00000591702 1873 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
PRKDCP78527 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
PRKDCP78527 HSPA8P17-201ENST00000427029 1382 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
PRKDCP78527 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
PRKDCP78527 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
PRKDCP78527 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.83□□□□□ -1.96
PRKDCP78527 DPY19L1P2-201ENST00000426647 915 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 ATP5JP1-201ENST00000431631 322 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.83□□□□□ -1.96
PRKDCP78527 SUN3-208ENST00000453192 801 ntTSL 5 BASIC2.83□□□□□ -1.96
PRKDCP78527 BNIP3P41-201ENST00000503774 571 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.83□□□□□ -1.96
PRKDCP78527 ATP5A1P2-202ENST00000616464 443 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 AC007998.5-201ENST00000622938 237 ntBASIC2.83□□□□□ -1.96
PRKDCP78527 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
PRKDCP78527 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 AC017079.2-201ENST00000416102 485 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 BTF3P5-201ENST00000457252 467 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 RPL38P1-201ENST00000460914 211 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 IGHV3-32-201ENST00000519182 355 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC2.82□□□□□ -1.96
PRKDCP78527 MIR5004-201ENST00000579078 107 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 AC064801.1-201ENST00000612025 407 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 AP001153.1-201ENST00000641024 338 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 ZNF962P-201ENST00000443465 3140 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 EIF1P3-201ENST00000423841 334 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.82□□□□□ -1.96
PRKDCP78527 AC006349.1-201ENST00000555526 235 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC2.82□□□□□ -1.96
PRKDCP78527 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
PRKDCP78527 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC2.82□□□□□ -1.96
PRKDCP78527 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 AL356274.2-201ENST00000624379 3752 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 MAPK10-253ENST00000641010 4072 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PRKDCP78527 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.82□□□□□ -1.96
PRKDCP78527 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.82□□□□□ -1.96
PRKDCP78527 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC2.82□□□□□ -1.96
PRKDCP78527 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.82□□□□□ -1.96
PRKDCP78527 AL451007.1-201ENST00000595491 289 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.82□□□□□ -1.96
PRKDCP78527 AC005183.1-201ENST00000603687 1979 ntBASIC2.82□□□□□ -1.96
PRKDCP78527 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
PRKDCP78527 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
PRKDCP78527 OR56A5-201ENST00000340110 738 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 RNA5SP399-201ENST00000364003 117 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 RPS17P13-201ENST00000448974 407 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 RBMY2UP-201ENST00000453474 324 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC2.81□□□□□ -1.96
PRKDCP78527 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PRKDCP78527 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PRKDCP78527 RNA5SP51-201ENST00000364750 119 ntBASIC2.81□□□□□ -1.96
PRKDCP78527 SNORA5.1-201ENST00000384275 131 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms