Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 RNU4-25P-201ENST00000410569 230 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RPL23AP26-201ENST00000412728 464 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.89□□□□□ -1.79
FOXA1P55317 AL592293.2-201ENST00000422292 996 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.89□□□□□ -1.79
FOXA1P55317 AL356535.1-201ENST00000440335 398 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 FCF1P7-201ENST00000451185 558 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RPL7P1-201ENST00000468161 747 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RPL7P9-201ENST00000468715 747 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RPL23AP71-201ENST00000470966 469 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RN7SL459P-201ENST00000481078 302 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 SYT14P1-201ENST00000481459 721 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RN7SL205P-201ENST00000490174 284 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RPL7P24-201ENST00000493052 752 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.89□□□□□ -1.79
FOXA1P55317 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC3.89□□□□□ -1.79
FOXA1P55317 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.89□□□□□ -1.79
FOXA1P55317 AC008745.1-201ENST00000604064 271 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA1P55317 AL589935.2-201ENST00000616471 1231 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RN7SL722P-201ENST00000617780 284 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 RN7SL565P-201ENST00000618246 284 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
FOXA1P55317 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC3.89□□□□□ -1.79
FOXA1P55317 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA1P55317 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA1P55317 BDP1P-201ENST00000582658 1990 ntBASIC3.89□□□□□ -1.79
FOXA1P55317 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.88□□□□□ -1.79
FOXA1P55317 CCT8P1-201ENST00000413611 1657 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 OR52B1P-201ENST00000316506 909 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 MIR383-201ENST00000362257 73 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 RNU11-4P-201ENST00000391149 133 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 AL807761.1-201ENST00000417622 171 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 NPM1P34-201ENST00000428821 893 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 KCTD9P3-201ENST00000434597 1169 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 AC096638.2-201ENST00000434965 711 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 YWHAQP9-201ENST00000445891 512 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 AC091167.1-201ENST00000492017 396 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 RN7SL604P-201ENST00000492589 296 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA1P55317 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA1P55317 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA1P55317 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 AC026726.1-201ENST00000512859 601 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 RPS27AP18-201ENST00000515536 459 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA1P55317 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA1P55317 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA1P55317 ELOCP28-201ENST00000590044 317 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.88□□□□□ -1.79
FOXA1P55317 MIR3653-201ENST00000625572 110 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.88□□□□□ -1.79
FOXA1P55317 AC027290.2-201ENST00000623210 18662 ntBASIC3.88□□□□□ -1.79
FOXA1P55317 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA1P55317 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
FOXA1P55317 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA1P55317 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA1P55317 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA1P55317 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA1P55317 AL035696.2-201ENST00000407941 709 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 HSPE1P12-201ENST00000412576 301 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AL590806.1-201ENST00000415818 853 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 FAR2P4-202ENST00000425399 584 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 HMGB1P32-201ENST00000425971 565 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AC023141.6-201ENST00000429418 337 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AF228730.2-201ENST00000438784 848 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA1P55317 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 MORF4L1P4-201ENST00000450245 976 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 CYCSP42-201ENST00000450823 238 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 FABP3P2-201ENST00000453169 399 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA1P55317 AC111000.5-201ENST00000506559 1178 ntBASIC3.87□□□□□ -1.79
FOXA1P55317 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA1P55317 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA1P55317 MIR4330-201ENST00000579077 105 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms