Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 AC007742.1-201ENST00000425789 329 ntBASIC6.33□□□□□ -1.4
LIG3P49916 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 ELOCP26-201ENST00000436067 329 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC002504.1-201ENST00000438281 691 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 PSPHP1-201ENST00000450062 261 ntBASIC6.33□□□□□ -1.4
LIG3P49916 USP9YP12-201ENST00000450481 570 ntBASIC6.33□□□□□ -1.4
LIG3P49916 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 MRE11P1-201ENST00000464884 2127 ntBASIC6.33□□□□□ -1.4
LIG3P49916 RPL21P71-201ENST00000465598 459 ntBASIC6.33□□□□□ -1.4
LIG3P49916 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 RN7SL170P-201ENST00000487098 295 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC109462.1-201ENST00000491087 368 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 AC008945.1-201ENST00000505144 499 ntBASIC6.33□□□□□ -1.4
LIG3P49916 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 HSD3BP3-201ENST00000514706 994 ntBASIC6.33□□□□□ -1.4
LIG3P49916 LY96-202ENST00000518893 430 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 AC011853.1-201ENST00000518911 454 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 AF279873.1-201ENST00000523393 313 ntBASIC6.33□□□□□ -1.4
LIG3P49916 BCAS2P1-201ENST00000528022 632 ntBASIC6.33□□□□□ -1.4
LIG3P49916 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
LIG3P49916 AC084121.1-201ENST00000533882 835 ntBASIC6.33□□□□□ -1.4
LIG3P49916 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 UBE2FP2-201ENST00000566646 462 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 LINC00556-201ENST00000569603 412 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC103710.1-201ENST00000610003 901 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 AC073593.1-201ENST00000624500 411 ntBASIC6.33□□□□□ -1.4
LIG3P49916 CASC19-264ENST00000641912 1184 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.33□□□□□ -1.4
LIG3P49916 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
LIG3P49916 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
LIG3P49916 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 MAPK10-328ENST00000641553 4009 ntBASIC6.32□□□□□ -1.4
LIG3P49916 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
LIG3P49916 Y_RNA.97-201ENST00000363094 102 ntBASIC6.32□□□□□ -1.4
LIG3P49916 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIG3P49916 GCNT1P4-201ENST00000404096 329 ntBASIC6.32□□□□□ -1.4
LIG3P49916 MIR1277-201ENST00000408536 78 ntBASIC6.32□□□□□ -1.4
LIG3P49916 U3.43-201ENST00000410734 213 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AL139128.1-201ENST00000413921 941 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 AL356583.2-201ENST00000426536 280 ntBASIC6.32□□□□□ -1.4
LIG3P49916 DYNLL1P7-201ENST00000429273 258 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 AC004865.1-201ENST00000442276 1003 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC112653.1-201ENST00000443851 386 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.32□□□□□ -1.4
LIG3P49916 AC092967.1-201ENST00000449016 481 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AL672138.1-201ENST00000450604 1015 ntBASIC6.32□□□□□ -1.4
LIG3P49916 RN7SL254P-201ENST00000460609 284 ntBASIC6.32□□□□□ -1.4
LIG3P49916 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 AC074386.1-201ENST00000476560 767 ntBASIC6.32□□□□□ -1.4
LIG3P49916 RPL12P30-201ENST00000488389 499 ntBASIC6.32□□□□□ -1.4
LIG3P49916 KLRA1P-201ENST00000503499 986 ntBASIC6.32□□□□□ -1.4
LIG3P49916 SNX18P24-201ENST00000505249 671 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 DUTP7-201ENST00000507982 486 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AF131216.2-201ENST00000512316 564 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 OR5M7P-201ENST00000526140 972 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC068587.4-201ENST00000533893 186 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 DPPA2P4-201ENST00000563717 878 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 EIF5A2P1-201ENST00000564027 460 ntBASIC6.32□□□□□ -1.4
LIG3P49916 AC141257.3-201ENST00000572906 215 ntBASIC6.32□□□□□ -1.4
LIG3P49916 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG3P49916 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG3P49916 MIR4502-201ENST00000580432 81 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms