Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH4O15457 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 RNA5SP130-201ENST00000364431 114 ntBASIC4.69□□□□□ -1.66
MSH4O15457 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH4O15457 AL356095.1-201ENST00000417217 199 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 RPS27AP12-201ENST00000429552 465 ntBASIC4.69□□□□□ -1.66
MSH4O15457 MRPL50P1-201ENST00000431951 384 ntBASIC4.69□□□□□ -1.66
MSH4O15457 UBE2V2P3-201ENST00000433562 437 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH4O15457 AC006011.1-201ENST00000442758 349 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH4O15457 AC114755.5-201ENST00000447760 831 ntBASIC4.69□□□□□ -1.66
MSH4O15457 RAB28P3-201ENST00000448325 597 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH4O15457 TCP11X3P-202ENST00000514289 1254 ntBASIC4.69□□□□□ -1.66
MSH4O15457 MTCO1P35-201ENST00000515270 228 ntBASIC4.69□□□□□ -1.66
MSH4O15457 RN7SKP21-201ENST00000516503 220 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH4O15457 AC063950.1-201ENST00000552036 308 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AC124068.1-201ENST00000563131 678 ntBASIC4.69□□□□□ -1.66
MSH4O15457 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.69□□□□□ -1.66
MSH4O15457 MIR6867-201ENST00000610636 67 ntBASIC4.69□□□□□ -1.66
MSH4O15457 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.69□□□□□ -1.66
MSH4O15457 AC010608.2-201ENST00000624830 470 ntBASIC4.69□□□□□ -1.66
MSH4O15457 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.69□□□□□ -1.66
MSH4O15457 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
MSH4O15457 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH4O15457 AC017104.4-201ENST00000636283 1592 ntBASIC4.69□□□□□ -1.66
MSH4O15457 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH4O15457 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSH4O15457 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH4O15457 AC116667.1-201ENST00000604855 2072 ntBASIC4.68□□□□□ -1.66
MSH4O15457 RNU4-23P-201ENST00000362839 140 ntBASIC4.68□□□□□ -1.66
MSH4O15457 RNU1-13P-201ENST00000384499 162 ntBASIC4.68□□□□□ -1.66
MSH4O15457 RNU11-4P-201ENST00000391149 133 ntBASIC4.68□□□□□ -1.66
MSH4O15457 AC240504.1-201ENST00000395709 845 ntBASIC4.68□□□□□ -1.66
MSH4O15457 ATP5F1P2-201ENST00000398143 760 ntBASIC4.68□□□□□ -1.66
MSH4O15457 SETP10-201ENST00000424368 814 ntBASIC4.68□□□□□ -1.66
MSH4O15457 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH4O15457 MAPRE1P3-201ENST00000435438 796 ntBASIC4.68□□□□□ -1.66
MSH4O15457 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH4O15457 RPL23AP89-201ENST00000439324 255 ntBASIC4.68□□□□□ -1.66
MSH4O15457 GEMIN8P3-201ENST00000445417 720 ntBASIC4.68□□□□□ -1.66
MSH4O15457 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH4O15457 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH4O15457 RN7SL604P-201ENST00000492589 296 ntBASIC4.68□□□□□ -1.66
MSH4O15457 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH4O15457 RNU6-319P-201ENST00000516025 108 ntBASIC4.68□□□□□ -1.66
MSH4O15457 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH4O15457 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH4O15457 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH4O15457 AL592494.3-201ENST00000609485 464 ntBASIC4.68□□□□□ -1.66
MSH4O15457 RNA5SP196-201ENST00000625967 102 ntBASIC4.68□□□□□ -1.66
MSH4O15457 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH4O15457 AC010300.1-201ENST00000600671 5134 ntBASIC4.68□□□□□ -1.66
MSH4O15457 AL356317.1-201ENST00000396110 1436 ntBASIC4.68□□□□□ -1.66
MSH4O15457 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
MSH4O15457 Z95327.2-201ENST00000414579 1873 ntBASIC4.68□□□□□ -1.66
MSH4O15457 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH4O15457 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 AC007342.9-201ENST00000623877 1385 ntBASIC4.67□□□□□ -1.66
MSH4O15457 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.67□□□□□ -1.66
MSH4O15457 AC026951.1-201ENST00000559530 2459 ntBASIC4.67□□□□□ -1.66
MSH4O15457 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH4O15457 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
MSH4O15457 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH4O15457 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSH4O15457 EIF4A1P3-201ENST00000411521 244 ntBASIC4.67□□□□□ -1.66
MSH4O15457 TRIM60P17-201ENST00000415181 719 ntBASIC4.67□□□□□ -1.66
MSH4O15457 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH4O15457 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.67□□□□□ -1.66
MSH4O15457 AL358176.3-201ENST00000420757 454 ntBASIC4.67□□□□□ -1.66
MSH4O15457 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH4O15457 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH4O15457 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH4O15457 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH4O15457 AC107015.1-201ENST00000466902 747 ntBASIC4.67□□□□□ -1.66
MSH4O15457 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH4O15457 AL358913.1-201ENST00000554342 121 ntBASIC4.67□□□□□ -1.66
MSH4O15457 AC007224.1-201ENST00000564410 144 ntBASIC4.67□□□□□ -1.66
MSH4O15457 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 MTND2P13-201ENST00000577438 1039 ntBASIC4.67□□□□□ -1.66
MSH4O15457 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH4O15457 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 AC010857.1-201ENST00000606398 594 ntBASIC4.67□□□□□ -1.66
MSH4O15457 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH4O15457 MIR7154-201ENST00000620673 73 ntBASIC4.67□□□□□ -1.66
MSH4O15457 AC015722.2-201ENST00000622210 551 ntBASIC4.67□□□□□ -1.66
MSH4O15457 AC068724.3-201ENST00000625906 87 ntBASIC4.67□□□□□ -1.66
MSH4O15457 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH4O15457 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
MSH4O15457 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms