Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AURKAPS2-201ENST00000454983 333 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC093166.2-201ENST00000455969 1017 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 SNORD108-201ENST00000459332 71 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 PDLIM1P4-201ENST00000504327 1006 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 HPRT1P2-201ENST00000505250 544 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 MRPS33P2-201ENST00000507850 322 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 SNORA74C-1-201ENST00000580726 201 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 MIR3667-201ENST00000581025 74 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AL512782.1-201ENST00000603093 364 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC138907.10-201ENST00000623708 983 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC092608.3-201ENST00000625017 386 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 FAM157B-203ENST00000639350 358 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 AC092376.2-201ENST00000622621 4116 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC006971.1-201ENST00000407916 4486 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 DNAJC19P6-201ENST00000401853 280 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 RNA5SP113-201ENST00000410486 84 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 QRSL1P2-201ENST00000418582 964 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 RPS12P23-201ENST00000419579 400 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 EIF4A1P1-201ENST00000420241 934 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AL121882.1-201ENST00000422893 417 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC093414.1-201ENST00000434712 514 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 FABP5P3-201ENST00000437960 408 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 ELOCP3-201ENST00000439303 348 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 GYG1P1-201ENST00000460864 698 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 RN7SL346P-201ENST00000491561 294 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC098799.3-201ENST00000506095 438 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 RNA5SP230-201ENST00000517039 122 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 SMG1P4-204ENST00000523028 4131 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 MIR4480-201ENST00000582492 71 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AL121932.1-201ENST00000605542 214 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC007497.1-201ENST00000610421 561 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC018926.3-201ENST00000618841 406 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 AC008758.3-201ENST00000507003 1829 ntBASIC6.29□□□□□ -1.4
CHMP4AQ9BY43 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 FTX-210ENST00000603037 8347 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 RNA5SP391-201ENST00000363456 119 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 RNA5SP27-201ENST00000363839 119 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 RPL37P1-201ENST00000432310 284 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 MTND4P15-201ENST00000437913 1033 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC092809.1-201ENST00000441469 474 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 RPL7AP61-201ENST00000443410 636 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC234781.3-201ENST00000452540 973 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC009963.2-201ENST00000453431 138 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 RPL23AP56-201ENST00000460778 453 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC083982.1-201ENST00000485679 344 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 RN7SKP234-201ENST00000517173 224 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 CDH12P4-201ENST00000517835 295 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 CDH12P3-201ENST00000517935 295 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 CDH12P1-201ENST00000518435 295 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 UBE2FP2-201ENST00000566646 462 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC091042.1-201ENST00000579213 173 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AP000919.1-202ENST00000581139 1264 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 FAM25E-202ENST00000608562 189 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AL163152.1-201ENST00000642001 374 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 AC017007.4-201ENST00000503353 1352 ntBASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP4AQ9BY43 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms