Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNORA71.2-201ENST00000364941 134 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 RNU6-1257P-201ENST00000384625 110 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 RNU4-27P-201ENST00000410889 139 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL158825.1-201ENST00000414735 521 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL592293.2-201ENST00000422292 996 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 RPL12P34-201ENST00000424532 479 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 VN1R42P-201ENST00000424651 344 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL732292.1-201ENST00000426692 226 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL512661.1-201ENST00000434586 1253 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC079168.2-201ENST00000453977 416 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC107398.1-201ENST00000486904 505 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 RN7SKP122-201ENST00000515923 296 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 RNU6-513P-201ENST00000516104 104 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AP001781.1-201ENST00000530977 207 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 NPM1P35-201ENST00000533043 868 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC093249.4-201ENST00000564755 259 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 BNIP3P27-201ENST00000599991 412 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC124856.1-201ENST00000600819 896 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL590392.1-201ENST00000604960 446 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC100847.1-201ENST00000611316 481 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL138955.1-201ENST00000622881 1040 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AL049536.1-201ENST00000625043 744 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 OR56B2P-202ENST00000641377 2453 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 AC073136.1-201ENST00000449426 2884 ntBASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC3Q9BQI4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 RNU6-666P-201ENST00000363499 107 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 RNU4-25P-201ENST00000410569 230 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 RSL24D1P6-201ENST00000426934 401 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 RPL34P26-201ENST00000445636 354 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AL035551.1-201ENST00000446931 348 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 H2AFZP5-201ENST00000446960 382 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 RPL32P14-201ENST00000463196 378 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC083829.1-201ENST00000503756 657 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC106734.1-201ENST00000568646 663 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC122134.1-202ENST00000569111 1201 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 CYCSP40-201ENST00000575927 294 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC133794.1-201ENST00000602731 914 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC079610.2-201ENST00000604818 690 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC008759.3-201ENST00000613300 508 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC018926.1-201ENST00000616335 435 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC004232.3-201ENST00000622977 525 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC007342.8-201ENST00000623278 678 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AC011815.3-201ENST00000624194 473 ntBASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC3Q9BQI4 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 ZNF137P-201ENST00000456718 1920 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 GCNT6-201ENST00000379591 934 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 OR5M12P-201ENST00000423388 929 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 AL035458.1-201ENST00000433096 585 ntBASIC4.55□□□□□ -1.68
CCDC3Q9BQI4 CACYBPP1-201ENST00000438592 684 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms