Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC009951.1-201ENST00000623674 2614 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 SNORA71.2-201ENST00000364941 134 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 Z86062.1-201ENST00000406773 777 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 MTND4P11-201ENST00000417020 1058 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 RPS27AP12-201ENST00000429552 465 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 RPS6P2-201ENST00000454208 705 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 MTCO1P35-201ENST00000515270 228 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 MIR2116-201ENST00000517221 80 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC084824.1-201ENST00000550917 1005 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AL049830.4-201ENST00000555149 351 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 RNF138P2-201ENST00000603490 592 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 CR589904.2-201ENST00000612533 440 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC123768.4-201ENST00000616244 701 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AP005019.3-201ENST00000620418 560 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AL161637.1-201ENST00000622380 412 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC004232.3-201ENST00000622977 525 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AL049536.1-201ENST00000625043 744 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 AC100778.3-201ENST00000580060 1750 ntBASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.72□□□□□ -1.65
HDDC3Q8N4P3 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC108467.2-201ENST00000617640 1597 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 RNA5SP509-201ENST00000364577 119 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 RNU1-64P-201ENST00000365443 163 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AL590762.2-201ENST00000395798 571 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC122718.1-201ENST00000439448 744 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 EEF1A1P1-201ENST00000447052 739 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 TPMTP4-201ENST00000450749 678 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 ZFRP1-201ENST00000457579 2970 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 FAM133DP-201ENST00000464802 691 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 RPL21P129-201ENST00000491732 478 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC007016.1-201ENST00000512110 244 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AP001781.1-201ENST00000530977 207 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 NOP56P3-201ENST00000549457 385 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 VN1R85P-201ENST00000601587 426 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC025175.1-201ENST00000606482 759 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC024941.1-201ENST00000612250 334 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 U3.53-201ENST00000628922 216 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 ZNF137P-201ENST00000456718 1920 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC000374.1-201ENST00000434698 1745 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 AC074029.4-201ENST00000624796 1859 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 DDX18P5-201ENST00000534547 1306 ntBASIC4.71□□□□□ -1.66
HDDC3Q8N4P3 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC009501.3-201ENST00000605001 1352 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 OR6C69P-201ENST00000394268 893 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms