Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ERCC6-202ENST00000374127 1782 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AC126323.6-202ENST00000568092 3511 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 RNU4-6P-201ENST00000410804 122 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 SETP9-201ENST00000423837 832 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 EIF1P3-201ENST00000423841 334 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 OR4F13P-201ENST00000428478 931 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AC090312.1-201ENST00000580637 348 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 AC027290.2-201ENST00000623210 18662 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 HSPD1P14-201ENST00000432666 1618 ntBASIC5.1□□□□□ -1.59
CCDC88AQ3V6T2 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 EOGT-210ENST00000615922 1931 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 MIR634-201ENST00000385208 97 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 HSPE1P16-201ENST00000426640 348 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AL358472.1-201ENST00000431295 329 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC115115.1-201ENST00000449927 248 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AL139099.1-201ENST00000497398 403 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 HPRT1P2-201ENST00000505250 544 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC093524.1-201ENST00000564266 1094 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC005261.6-201ENST00000623072 1387 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AC125336.1-201ENST00000508893 2827 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 Z95331.1-201ENST00000623075 23112 ntBASIC5.09□□□□□ -1.59
CCDC88AQ3V6T2 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AP001273.1-201ENST00000624493 3152 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AC007068.1-201ENST00000396690 844 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 RPL21P17-201ENST00000397467 475 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 USP9YP4-201ENST00000424401 1745 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AC018635.1-201ENST00000468292 1030 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AC005412.1-201ENST00000580812 1049 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 MIR4433B-201ENST00000581329 102 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 OR2BH1P-201ENST00000608850 864 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AL138820.1-201ENST00000617901 5305 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AC023632.6-201ENST00000624338 2177 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 AL034408.1-202ENST00000636088 415 ntBASIC5.09□□□□□ -1.6
CCDC88AQ3V6T2 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 VPS35P1-201ENST00000563400 1518 ntBASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 RNA5SP175-201ENST00000364275 119 ntBASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 MIR183-201ENST00000384958 110 ntBASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 Z92545.1-201ENST00000411782 234 ntBASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms