Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RPL7P4-203ENST00000430239 730 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.43□□□□□ -1.7
COL4A4P53420 GEMIN8P3-201ENST00000445417 720 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A4P53420 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A4P53420 RPS4XP15-201ENST00000489210 795 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 HMGB3P14-201ENST00000494195 599 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AC091917.2-201ENST00000505002 744 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A4P53420 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.43□□□□□ -1.7
COL4A4P53420 AL352979.3-201ENST00000553515 247 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A4P53420 HSPE1P5-201ENST00000561489 272 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AC022655.2-201ENST00000577280 318 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 AC019278.1-201ENST00000623516 479 ntBASIC4.43□□□□□ -1.7
COL4A4P53420 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A4P53420 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL4A4P53420 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
COL4A4P53420 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL4A4P53420 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A4P53420 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A4P53420 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
COL4A4P53420 DDX18P4-201ENST00000511690 1966 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
COL4A4P53420 SNORD66.1-201ENST00000391230 76 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A4P53420 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.42□□□□□ -1.7
COL4A4P53420 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 MTND4LP12-201ENST00000448237 295 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 AC026427.2-201ENST00000506228 536 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.42□□□□□ -1.7
COL4A4P53420 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 PHBP17-201ENST00000528576 541 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.42□□□□□ -1.7
COL4A4P53420 AC064801.1-201ENST00000612025 407 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 AL021997.2-201ENST00000615674 271 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 AL138721.1-201ENST00000616756 179 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
COL4A4P53420 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.42□□□□□ -1.7
COL4A4P53420 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A4P53420 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL4A4P53420 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC4.42□□□□□ -1.7
COL4A4P53420 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
COL4A4P53420 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A4P53420 AL672167.1-205ENST00000641112 3080 ntBASIC4.42□□□□□ -1.7
COL4A4P53420 MIR183-201ENST00000384958 110 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.41□□□□□ -1.7
COL4A4P53420 SNORA57.3-201ENST00000411095 141 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 AC096664.2-201ENST00000411843 406 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 TCEA1P4-201ENST00000415066 844 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 RPL23AP25-201ENST00000430973 463 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A4P53420 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A4P53420 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A4P53420 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A4P53420 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.41□□□□□ -1.7
COL4A4P53420 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A4P53420 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.41□□□□□ -1.7
COL4A4P53420 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 AL354798.1-201ENST00000622505 329 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 MIR3651-201ENST00000630427 90 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
COL4A4P53420 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A4P53420 IL6STP1-201ENST00000346911 1020 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A4P53420 RAD23BP3-201ENST00000454157 1152 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 RPL7P22-201ENST00000466005 733 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 RPS26P28-201ENST00000470806 348 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 RPS29P19-201ENST00000479709 171 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A4P53420 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A4P53420 MIR3908-201ENST00000579798 126 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 AC090312.1-201ENST00000580637 348 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 AC110743.1-201ENST00000584870 478 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 AC114878.2-201ENST00000604863 1251 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A4P53420 AC015922.4-201ENST00000612568 690 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 FP236240.3-201ENST00000623061 327 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 U6.105-201ENST00000637379 88 ntBASIC4.41□□□□□ -1.7
COL4A4P53420 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A4P53420 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A4P53420 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.4□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms