Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC137768.1-201ENST00000549998 553 ntBASIC6.13□□□□□ -1.43
MRE11P49959 AC024909.2-201ENST00000553035 286 ntBASIC6.13□□□□□ -1.43
MRE11P49959 AL049830.4-201ENST00000555149 351 ntBASIC6.13□□□□□ -1.43
MRE11P49959 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC6.13□□□□□ -1.43
MRE11P49959 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC6.13□□□□□ -1.43
MRE11P49959 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC6.13□□□□□ -1.43
MRE11P49959 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC6.13□□□□□ -1.43
MRE11P49959 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.13□□□□□ -1.43
MRE11P49959 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.13□□□□□ -1.43
MRE11P49959 FAM27E4-201ENST00000605259 342 ntBASIC6.13□□□□□ -1.43
MRE11P49959 AC135507.1-201ENST00000607214 561 ntBASIC6.13□□□□□ -1.43
MRE11P49959 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MRE11P49959 AL158062.1-201ENST00000619632 745 ntBASIC6.13□□□□□ -1.43
MRE11P49959 CU639417.4-201ENST00000623928 207 ntBASIC6.13□□□□□ -1.43
MRE11P49959 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC6.13□□□□□ -1.43
MRE11P49959 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MRE11P49959 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC6.13□□□□□ -1.43
MRE11P49959 SGO1P1-201ENST00000603525 1447 ntBASIC6.13□□□□□ -1.43
MRE11P49959 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.13□□□□□ -1.43
MRE11P49959 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MRE11P49959 AP001273.1-201ENST00000624493 3152 ntBASIC6.13□□□□□ -1.43
MRE11P49959 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
MRE11P49959 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MRE11P49959 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MRE11P49959 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MRE11P49959 Y_RNA.51-201ENST00000362725 102 ntBASIC6.12□□□□□ -1.43
MRE11P49959 RNU4-51P-201ENST00000364206 140 ntBASIC6.12□□□□□ -1.43
MRE11P49959 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC6.12□□□□□ -1.43
MRE11P49959 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
MRE11P49959 Y_RNA.578-201ENST00000390903 88 ntBASIC6.12□□□□□ -1.43
MRE11P49959 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MRE11P49959 AC092638.1-201ENST00000411966 1275 ntBASIC6.12□□□□□ -1.43
MRE11P49959 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.12□□□□□ -1.43
MRE11P49959 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.12□□□□□ -1.43
MRE11P49959 NANOGP2-201ENST00000435391 727 ntBASIC6.12□□□□□ -1.43
MRE11P49959 PA2G4P6-201ENST00000438325 1197 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC6.12□□□□□ -1.43
MRE11P49959 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.12□□□□□ -1.43
MRE11P49959 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.12□□□□□ -1.43
MRE11P49959 AC104978.1-201ENST00000449387 391 ntBASIC6.12□□□□□ -1.43
MRE11P49959 EIF4EBP2P1-201ENST00000450009 343 ntBASIC6.12□□□□□ -1.43
MRE11P49959 ZNF736P5Y-201ENST00000451173 805 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC6.12□□□□□ -1.43
MRE11P49959 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC6.12□□□□□ -1.43
MRE11P49959 USP9YP10-201ENST00000454868 628 ntBASIC6.12□□□□□ -1.43
MRE11P49959 RPS4XP1-201ENST00000482189 787 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AC072052.1-201ENST00000496556 306 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC6.12□□□□□ -1.43
MRE11P49959 ARL4AP1-201ENST00000503220 705 ntBASIC6.12□□□□□ -1.43
MRE11P49959 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC6.12□□□□□ -1.43
MRE11P49959 AC073358.1-201ENST00000505671 684 ntBASIC6.12□□□□□ -1.43
MRE11P49959 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.12□□□□□ -1.43
MRE11P49959 USP9YP5-201ENST00000511770 630 ntBASIC6.12□□□□□ -1.43
MRE11P49959 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC6.12□□□□□ -1.43
MRE11P49959 AC104417.1-201ENST00000523974 751 ntBASIC6.12□□□□□ -1.43
MRE11P49959 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC6.12□□□□□ -1.43
MRE11P49959 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC6.12□□□□□ -1.43
MRE11P49959 HSPE1P2-201ENST00000554777 306 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AL049872.1-201ENST00000556323 322 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AC027807.1-201ENST00000559921 996 ntBASIC6.12□□□□□ -1.43
MRE11P49959 ATP5J2P6-201ENST00000565203 266 ntBASIC6.12□□□□□ -1.43
MRE11P49959 MIR4260-201ENST00000583107 67 ntBASIC6.12□□□□□ -1.43
MRE11P49959 RN7SL52P-201ENST00000584271 284 ntBASIC6.12□□□□□ -1.43
MRE11P49959 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC6.12□□□□□ -1.43
MRE11P49959 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC6.12□□□□□ -1.43
MRE11P49959 DPRXP5-201ENST00000604662 539 ntBASIC6.12□□□□□ -1.43
MRE11P49959 AC105129.3-201ENST00000605455 485 ntBASIC6.12□□□□□ -1.43
MRE11P49959 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.12□□□□□ -1.43
MRE11P49959 RN7SL722P-201ENST00000617780 284 ntBASIC6.12□□□□□ -1.43
MRE11P49959 RN7SL565P-201ENST00000618246 284 ntBASIC6.12□□□□□ -1.43
MRE11P49959 MIR7641-1-201ENST00000627518 61 ntBASIC6.12□□□□□ -1.43
MRE11P49959 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.12□□□□□ -1.43
MRE11P49959 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
MRE11P49959 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MRE11P49959 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MRE11P49959 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MRE11P49959 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MRE11P49959 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
MRE11P49959 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MRE11P49959 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MRE11P49959 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MRE11P49959 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MRE11P49959 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
MRE11P49959 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
MRE11P49959 UBE2Q2P1-202ENST00000354771 883 ntBASIC6.11□□□□□ -1.43
MRE11P49959 RNA5SP30-201ENST00000365552 115 ntBASIC6.11□□□□□ -1.43
MRE11P49959 OR13C3-201ENST00000374781 1108 ntBASIC6.11□□□□□ -1.43
MRE11P49959 RNU6-224P-201ENST00000384055 107 ntBASIC6.11□□□□□ -1.43
MRE11P49959 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC6.11□□□□□ -1.43
MRE11P49959 OR6E1P-201ENST00000414424 923 ntBASIC6.11□□□□□ -1.43
MRE11P49959 NENFP1-201ENST00000419476 466 ntBASIC6.11□□□□□ -1.43
MRE11P49959 PTP4A1P5-201ENST00000420305 455 ntBASIC6.11□□□□□ -1.43
MRE11P49959 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.11□□□□□ -1.43
MRE11P49959 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC6.11□□□□□ -1.43
MRE11P49959 RPS3AP44-201ENST00000425466 790 ntBASIC6.11□□□□□ -1.43
MRE11P49959 PRELID3BP10-201ENST00000431957 584 ntBASIC6.11□□□□□ -1.43
MRE11P49959 AC010153.1-201ENST00000432862 727 ntBASIC6.11□□□□□ -1.43
MRE11P49959 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.11□□□□□ -1.43
MRE11P49959 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.11□□□□□ -1.43
MRE11P49959 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms