Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 UBE2V1P3-201ENST00000439651 417 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AC069285.2-201ENST00000440210 275 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.27□□□□□ -1.73
SHMT2P34897 GEMIN8P3-201ENST00000445417 720 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.27□□□□□ -1.73
SHMT2P34897 RPL31P20-201ENST00000449593 360 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AC011276.1-201ENST00000469688 323 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 NDUFA5P9-201ENST00000472609 340 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 LARP7P4-201ENST00000481075 878 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.27□□□□□ -1.73
SHMT2P34897 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
SHMT2P34897 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.27□□□□□ -1.73
SHMT2P34897 MTCYBP19-201ENST00000517463 1124 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 MYL12AP1-201ENST00000518490 515 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AC104997.1-201ENST00000519761 717 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.27□□□□□ -1.73
SHMT2P34897 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.27□□□□□ -1.73
SHMT2P34897 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.27□□□□□ -1.73
SHMT2P34897 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 AC113403.1-201ENST00000604910 193 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AL158196.1-201ENST00000616786 434 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.27□□□□□ -1.73
SHMT2P34897 AC007546.2-201ENST00000623996 360 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 AC090971.4-201ENST00000560291 1800 ntBASIC4.27□□□□□ -1.73
SHMT2P34897 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.27□□□□□ -1.73
SHMT2P34897 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SHMT2P34897 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
SHMT2P34897 VPS35P1-201ENST00000563400 1518 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.26□□□□□ -1.73
SHMT2P34897 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.26□□□□□ -1.73
SHMT2P34897 AC008033.1-201ENST00000216407 1162 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SHMT2P34897 SNORA11F-201ENST00000408237 128 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.26□□□□□ -1.73
SHMT2P34897 AL592293.2-201ENST00000422292 996 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.26□□□□□ -1.73
SHMT2P34897 RPS29P17-201ENST00000430795 166 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 CDY14P-201ENST00000431260 1014 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.26□□□□□ -1.73
SHMT2P34897 CDY12P-201ENST00000440679 1015 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 CDY13P-201ENST00000445813 1015 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 CDY23P-201ENST00000451661 1014 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.26□□□□□ -1.73
SHMT2P34897 SNORA70.17-201ENST00000516449 133 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AC010476.1-201ENST00000519111 851 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 OR8G5-201ENST00000524943 1041 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SHMT2P34897 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.26□□□□□ -1.73
SHMT2P34897 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.26□□□□□ -1.73
SHMT2P34897 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.26□□□□□ -1.73
SHMT2P34897 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.26□□□□□ -1.73
SHMT2P34897 AC005229.3-201ENST00000603438 323 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AC010201.1-201ENST00000605051 540 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.26□□□□□ -1.73
SHMT2P34897 AC007620.3-201ENST00000608131 497 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AL135786.2-201ENST00000608422 615 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 AC140479.6-201ENST00000633535 357 ntBASIC4.26□□□□□ -1.73
SHMT2P34897 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SHMT2P34897 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.26□□□□□ -1.73
SHMT2P34897 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SHMT2P34897 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SHMT2P34897 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.26□□□□□ -1.73
SHMT2P34897 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
SHMT2P34897 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SHMT2P34897 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.26□□□□□ -1.73
SHMT2P34897 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.25□□□□□ -1.73
SHMT2P34897 RNU6-1251P-201ENST00000364502 107 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
SHMT2P34897 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SHMT2P34897 RPL5P19-201ENST00000404228 893 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AL078604.1-201ENST00000404609 466 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 RNU4-25P-201ENST00000410569 230 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 GAPDHP49-201ENST00000421421 961 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC016712.1-201ENST00000431088 378 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 MTCO1P45-201ENST00000431457 267 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.25□□□□□ -1.73
SHMT2P34897 CBX1P1-201ENST00000440184 427 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 FHP1-201ENST00000442741 703 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.25□□□□□ -1.73
SHMT2P34897 PSMC1P13-201ENST00000458195 985 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC079804.1-201ENST00000461922 436 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC025674.1-201ENST00000507074 324 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 ATP1B1P1-201ENST00000509767 915 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC090515.3-201ENST00000560431 315 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms