Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SCARNA15-201ENST00000607520 4325 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.76□□□□□ -1.49
SMARCA1P28370 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SMARCA1P28370 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 METTL21EP-201ENST00000298105 713 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 TCEA1P4-201ENST00000415066 844 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.76□□□□□ -1.49
SMARCA1P28370 CHEK2P3-201ENST00000416118 248 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 HMGB1P49-201ENST00000418882 569 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 RPS27P18-201ENST00000431701 247 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 MTCYBP42-201ENST00000444653 1130 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 HMGB3P6-201ENST00000444896 598 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 CASP3P1-201ENST00000446037 609 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.76□□□□□ -1.49
SMARCA1P28370 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.76□□□□□ -1.49
SMARCA1P28370 RN7SL517P-201ENST00000462240 305 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AC093270.2-201ENST00000486157 792 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 MRPS33P2-201ENST00000507850 322 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.76□□□□□ -1.49
SMARCA1P28370 snoU109.6-201ENST00000516831 118 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.76□□□□□ -1.49
SMARCA1P28370 EMP1-206ENST00000537612 505 ntTSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 PCNPP1-201ENST00000552501 511 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 DUXAP6-201ENST00000553858 601 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 SULT1C2P2-201ENST00000562517 294 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 ATP5F1P7-201ENST00000567330 760 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AC127024.5-201ENST00000580085 462 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AC008088.1-201ENST00000580993 280 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC5.76□□□□□ -1.49
SMARCA1P28370 AC091057.2-201ENST00000602594 792 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AC104687.2-201ENST00000604442 342 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AC005084.1-201ENST00000605160 304 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 AL049794.2-201ENST00000616301 365 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.76□□□□□ -1.49
SMARCA1P28370 AC017037.3-201ENST00000625016 472 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.76□□□□□ -1.49
SMARCA1P28370 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SMARCA1P28370 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 AC111188.2-201ENST00000529697 1387 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SMARCA1P28370 AC083843.2-201ENST00000568248 6253 ntBASIC5.76□□□□□ -1.49
SMARCA1P28370 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
SMARCA1P28370 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SMARCA1P28370 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SMARCA1P28370 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.75□□□□□ -1.49
SMARCA1P28370 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SMARCA1P28370 SNORD116-2-201ENST00000384274 95 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 SNORD116-6-201ENST00000384711 96 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SMARCA1P28370 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 TAF13P2-201ENST00000416876 286 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.75□□□□□ -1.49
SMARCA1P28370 AF186996.5-201ENST00000418098 904 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC5.75□□□□□ -1.49
SMARCA1P28370 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC5.75□□□□□ -1.49
SMARCA1P28370 GTF2IP2-201ENST00000424290 697 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.75□□□□□ -1.49
SMARCA1P28370 YWHAEP5-201ENST00000431545 765 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.75□□□□□ -1.49
SMARCA1P28370 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.75□□□□□ -1.49
SMARCA1P28370 AC092170.1-201ENST00000440211 356 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AL353093.1-201ENST00000441292 436 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AL592437.1-201ENST00000443781 492 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 RPL31P44-201ENST00000447680 377 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 RPL7L1P1-201ENST00000448259 785 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 NPM1P39-201ENST00000449818 867 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AL691482.1-201ENST00000453255 87 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC5.75□□□□□ -1.49
SMARCA1P28370 RPL7P16-201ENST00000479738 738 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 OR5D15P-201ENST00000531671 942 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.75□□□□□ -1.49
SMARCA1P28370 EDDM3DP-201ENST00000554692 434 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 AC009094.1-201ENST00000564443 426 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.75□□□□□ -1.49
SMARCA1P28370 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.75□□□□□ -1.49
SMARCA1P28370 AC021171.1-201ENST00000603137 706 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 MTND4P10-201ENST00000446199 1363 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SMARCA1P28370 AC093311.1-201ENST00000506586 2021 ntBASIC5.75□□□□□ -1.49
SMARCA1P28370 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.75□□□□□ -1.49
SMARCA1P28370 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms