Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SNORD74.4-201ENST00000364129 80 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 RNU6-673P-201ENST00000365084 104 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 SNORD66.1-201ENST00000391230 76 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC097374.1-203ENST00000400783 485 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 SNORA74C-2-201ENST00000411179 201 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 RAB28P1-201ENST00000411517 641 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 RPS23P10-201ENST00000416185 486 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 COX6CP17-201ENST00000421389 185 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 RPL23AP1-201ENST00000428990 471 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC016712.1-201ENST00000431088 378 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 PRELID3BP10-201ENST00000431957 584 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 FTH1P16-201ENST00000435241 552 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 RPSAP41-201ENST00000439695 860 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 NDUFS5P3-201ENST00000450668 321 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 CYCSP42-201ENST00000450823 238 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 RPL7P22-201ENST00000466005 733 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 RPL21P126-201ENST00000470049 478 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 ATP1B1P1-201ENST00000509767 915 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC006499.6-201ENST00000511169 607 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DMBP28068 IGLVIV-53-201ENST00000520107 367 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DMBP28068 MIR5096-201ENST00000583713 70 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 RPL12P25-202ENST00000598100 674 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC004825.2-201ENST00000616634 455 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AP005019.3-201ENST00000620418 560 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AC067852.7-201ENST00000623270 535 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL049536.1-201ENST00000625043 744 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL445437.1-201ENST00000623157 3087 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HLA-DMBP28068 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.31□□□□□ -1.88
HLA-DMBP28068 PNPT1P2-201ENST00000456768 2050 ntBASIC3.31□□□□□ -1.88
HLA-DMBP28068 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 MFSD8-242ENST00000641690 4199 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AL592148.3-201ENST00000608771 2646 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC011266.1-201ENST00000624119 3569 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 RNU1-130P-201ENST00000363930 160 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 SNORA62-201ENST00000365493 153 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 MIR129-1-201ENST00000384972 72 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 MIR513A2-201ENST00000385249 127 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 NCSTNP1-201ENST00000406229 144 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 UBTFL3-201ENST00000418934 1024 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AL139095.3-201ENST00000419672 1203 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 RPL18P10-201ENST00000425606 538 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 RPL12P28-201ENST00000430852 489 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 TPT1P12-201ENST00000448968 492 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 UBTFL6-201ENST00000477929 1024 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC013356.1-201ENST00000489027 564 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC108043.1-201ENST00000512696 574 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC015795.1-201ENST00000513669 327 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC034205.1-201ENST00000520621 638 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 MIR4277-201ENST00000578298 84 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AL031666.3-201ENST00000609320 1006 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms