Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC091286.1-201ENST00000431233 461 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 TMX2P1-201ENST00000436507 708 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 NOTCH2P1-201ENST00000443481 624 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
COL5A1P20908 AC110792.1-201ENST00000491826 472 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.03□□□□□ -1.76
COL5A1P20908 RN7SKP141-201ENST00000516167 338 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AC037471.2-201ENST00000564941 598 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.03□□□□□ -1.76
COL5A1P20908 AL031666.3-201ENST00000609320 1006 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 AC019176.2-201ENST00000611579 315 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AC091905.2-201ENST00000623143 306 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 AC007342.8-201ENST00000623278 678 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 AC009093.8-201ENST00000641769 292 ntBASIC4.03□□□□□ -1.76
COL5A1P20908 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.03□□□□□ -1.76
COL5A1P20908 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.03□□□□□ -1.76
COL5A1P20908 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A1P20908 RN7SKP97-201ENST00000410966 333 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 RPL23AP25-201ENST00000430973 463 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 RPS4XP4-201ENST00000443195 763 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.02□□□□□ -1.77
COL5A1P20908 ARL4AP1-201ENST00000503220 705 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC026427.2-201ENST00000506228 536 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 PAICSP4-201ENST00000517543 1253 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.02□□□□□ -1.77
COL5A1P20908 AL160290.3-201ENST00000604869 165 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC023509.5-201ENST00000617434 807 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
COL5A1P20908 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
COL5A1P20908 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.02□□□□□ -1.77
COL5A1P20908 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
COL5A1P20908 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 AC027290.2-201ENST00000623210 18662 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
COL5A1P20908 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 MIR1179-201ENST00000408703 91 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 RPL7P22-201ENST00000466005 733 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.02□□□□□ -1.77
COL5A1P20908 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A1P20908 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 BTG4P1-201ENST00000510421 183 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 HMGN2P47-201ENST00000559378 272 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 AC106782.4-201ENST00000568264 210 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 MIR4433B-201ENST00000581329 102 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 ZNF415P1-201ENST00000582279 1166 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AL121890.2-201ENST00000617644 465 ntBASIC4.02□□□□□ -1.77
COL5A1P20908 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A1P20908 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
COL5A1P20908 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.02□□□□□ -1.77
COL5A1P20908 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.01□□□□□ -1.77
COL5A1P20908 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A1P20908 AL929601.4-201ENST00000613011 1341 ntBASIC4.01□□□□□ -1.77
COL5A1P20908 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A1P20908 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A1P20908 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A1P20908 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
COL5A1P20908 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.01□□□□□ -1.77
COL5A1P20908 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A1P20908 OR4A15-201ENST00000314706 1035 ntBASIC4.01□□□□□ -1.77
COL5A1P20908 RNU6-213P-201ENST00000384051 104 ntBASIC4.01□□□□□ -1.77
COL5A1P20908 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.01□□□□□ -1.77
COL5A1P20908 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.01□□□□□ -1.77
COL5A1P20908 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.01□□□□□ -1.77
COL5A1P20908 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.01□□□□□ -1.77
COL5A1P20908 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.01□□□□□ -1.77
COL5A1P20908 RPS20P21-201ENST00000466859 343 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms