Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH3P20585 AP000936.3-201ENST00000438127 255 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC006994.1-201ENST00000438212 839 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH3P20585 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.65□□□□□ -1.67
MSH3P20585 RPL7P33-201ENST00000444159 742 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH3P20585 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH3P20585 CALM1P2-201ENST00000452941 448 ntBASIC4.65□□□□□ -1.67
MSH3P20585 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.65□□□□□ -1.67
MSH3P20585 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.65□□□□□ -1.67
MSH3P20585 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH3P20585 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.65□□□□□ -1.67
MSH3P20585 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.65□□□□□ -1.67
MSH3P20585 IGKV1-32-201ENST00000519290 311 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH3P20585 AP001372.4-201ENST00000524889 472 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AL110118.1-201ENST00000553543 400 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 AL121594.4-201ENST00000556211 1196 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC104229.1-201ENST00000561364 255 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC124283.4-201ENST00000581815 456 ntBASIC4.65□□□□□ -1.67
MSH3P20585 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 AC091057.3-201ENST00000602684 733 ntBASIC4.65□□□□□ -1.67
MSH3P20585 AC004948.1-201ENST00000609858 672 ntBASIC4.65□□□□□ -1.67
MSH3P20585 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH3P20585 AC073342.3-201ENST00000624211 193 ntBASIC4.65□□□□□ -1.67
MSH3P20585 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.65□□□□□ -1.67
MSH3P20585 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 AC005332.5-201ENST00000591222 2919 ntBASIC4.65□□□□□ -1.67
MSH3P20585 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSH3P20585 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 AC073429.2-201ENST00000569694 1444 ntBASIC4.64□□□□□ -1.67
MSH3P20585 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
MSH3P20585 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 RPL22P22-201ENST00000395439 379 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AC140479.3-201ENST00000418944 1126 ntBASIC4.64□□□□□ -1.67
MSH3P20585 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 NDUFA5P10-201ENST00000432147 357 ntBASIC4.64□□□□□ -1.67
MSH3P20585 CYCSP11-201ENST00000436426 315 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AC022795.1-201ENST00000473808 480 ntBASIC4.64□□□□□ -1.67
MSH3P20585 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
MSH3P20585 ARL4AP1-201ENST00000503220 705 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 TCP11X3P-202ENST00000514289 1254 ntBASIC4.64□□□□□ -1.67
MSH3P20585 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.64□□□□□ -1.67
MSH3P20585 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.64□□□□□ -1.67
MSH3P20585 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.64□□□□□ -1.67
MSH3P20585 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 AC096553.1-201ENST00000605169 829 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AL353600.1-201ENST00000608148 251 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.64□□□□□ -1.67
MSH3P20585 AC234782.5-201ENST00000617723 324 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 AL596275.2-204ENST00000641628 552 ntBASIC4.64□□□□□ -1.67
MSH3P20585 AL596275.2-206ENST00000641957 626 ntBASIC4.64□□□□□ -1.67
MSH3P20585 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
MSH3P20585 AC008432.1-201ENST00000615912 1320 ntBASIC4.64□□□□□ -1.67
MSH3P20585 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.64□□□□□ -1.67
MSH3P20585 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH3P20585 AC010928.1-201ENST00000592477 1447 ntBASIC4.63□□□□□ -1.67
MSH3P20585 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
MSH3P20585 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 AC103591.2-201ENST00000265259 766 ntBASIC4.63□□□□□ -1.67
MSH3P20585 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.63□□□□□ -1.67
MSH3P20585 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
MSH3P20585 HMGB1P10-201ENST00000395823 563 ntBASIC4.63□□□□□ -1.67
MSH3P20585 RNU2-17P-201ENST00000410290 190 ntBASIC4.63□□□□□ -1.67
MSH3P20585 RNU6-584P-201ENST00000410350 95 ntBASIC4.63□□□□□ -1.67
MSH3P20585 RNU2-50P-201ENST00000410494 143 ntBASIC4.63□□□□□ -1.67
MSH3P20585 VDAC1P9-201ENST00000412766 841 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AC016769.2-201ENST00000414815 475 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.63□□□□□ -1.67
MSH3P20585 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.63□□□□□ -1.67
MSH3P20585 ATG4AP1-201ENST00000416893 538 ntBASIC4.63□□□□□ -1.67
MSH3P20585 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.63□□□□□ -1.67
MSH3P20585 RPL7P57-201ENST00000423238 740 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms