Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL6A1P12109 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A1P12109 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL6A1P12109 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A1P12109 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A1P12109 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A1P12109 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A1P12109 OR9K1P-202ENST00000641111 3217 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A1P12109 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL6A1P12109 AC126755.2-208ENST00000327792 462 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC138969.1-213ENST00000331436 462 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL6A1P12109 RNU6-157P-201ENST00000383957 107 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 RPL11P3-201ENST00000395256 523 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 RSL24D1P4-201ENST00000400938 484 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 RAP1BP3-201ENST00000407180 549 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 RNA5SP487-201ENST00000410186 122 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC098592.1-201ENST00000419352 333 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 COX6CP17-201ENST00000421389 185 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A1P12109 C4BPAP2-201ENST00000428434 478 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC6.05□□□□□ -1.44
COL6A1P12109 GSTM5P1-201ENST00000434751 660 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AL589765.3-201ENST00000446084 462 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A1P12109 AL672138.1-201ENST00000450604 1015 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A1P12109 RN7SL385P-201ENST00000468873 276 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A1P12109 RPL7P16-201ENST00000479738 738 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC6.05□□□□□ -1.44
COL6A1P12109 F11-205ENST00000492972 1204 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A1P12109 AC092045.1-201ENST00000495716 1231 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A1P12109 SCARNA16.4-201ENST00000516956 187 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 RNA5SP373-201ENST00000517271 95 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL6A1P12109 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.05□□□□□ -1.44
COL6A1P12109 AC008083.2-201ENST00000546707 476 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.05□□□□□ -1.44
COL6A1P12109 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.05□□□□□ -1.44
COL6A1P12109 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A1P12109 H3F3BP2-201ENST00000583907 357 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC6.05□□□□□ -1.44
COL6A1P12109 RSL24D1P11-201ENST00000591045 491 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC093799.2-201ENST00000610062 578 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC011472.4-201ENST00000615848 491 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 MIR7703-201ENST00000620784 77 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AC007494.3-201ENST00000624660 743 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 AL160394.1-201ENST00000624765 724 ntBASIC6.05□□□□□ -1.44
COL6A1P12109 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL6A1P12109 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL6A1P12109 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A1P12109 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A1P12109 AC015799.1-201ENST00000622996 3122 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
COL6A1P12109 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A1P12109 SNURFL-201ENST00000309296 343 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 RNU1-87P-201ENST00000363727 170 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL6A1P12109 Y_RNA.465-201ENST00000384293 102 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 AC093719.1-202ENST00000392735 373 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 ATP5HP3-201ENST00000396994 486 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 RNA5SP251-201ENST00000410614 137 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 OR4K6P-201ENST00000416478 897 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 OR6C64P-201ENST00000419708 825 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A1P12109 AC004074.1-201ENST00000421810 1063 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A1P12109 MOB1AP1-201ENST00000430903 535 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 HSD52-202ENST00000436225 772 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A1P12109 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A1P12109 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A1P12109 AC092647.2-201ENST00000452998 253 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A1P12109 RPL7AP52-201ENST00000458096 790 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 RPS7P6-201ENST00000485777 579 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC6.04□□□□□ -1.44
COL6A1P12109 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC6.04□□□□□ -1.44
COL6A1P12109 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.04□□□□□ -1.44
COL6A1P12109 DUXAP1-201ENST00000556632 463 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.04□□□□□ -1.44
COL6A1P12109 MIR3915-201ENST00000578518 97 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 AC010487.1-201ENST00000594408 1172 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.04□□□□□ -1.44
COL6A1P12109 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A1P12109 AL513327.3-201ENST00000602618 469 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 AC093765.1-201ENST00000603758 881 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.04□□□□□ -1.44
COL6A1P12109 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6.04□□□□□ -1.44
COL6A1P12109 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms