Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL133268.1-201ENST00000405676 1401 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL034370.1-201ENST00000397254 1590 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC131971.1-201ENST00000332881 1482 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 RNU5B-1-201ENST00000363286 116 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 SNORA58B-201ENST00000364259 136 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 U6.112-201ENST00000384129 70 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 RNU6-98P-201ENST00000384173 107 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 RNU1-106P-201ENST00000384382 164 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL589647.1-201ENST00000402485 466 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 U3.36-201ENST00000408418 213 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 RN7SKP199-201ENST00000410325 305 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 UBE2V1P9-201ENST00000414760 368 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 PTP4A1P7-201ENST00000423476 514 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL606517.1-201ENST00000446914 387 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 RPS6P2-201ENST00000454208 705 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 CYCSP34-201ENST00000458172 304 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 RPL21P6-201ENST00000479171 504 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 HMGN2P25-201ENST00000486956 268 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC020890.1-201ENST00000491837 504 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 MRPS33P2-201ENST00000507850 322 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AP001372.4-201ENST00000524889 472 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AC095055.1-201ENST00000603472 1113 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 RPAP2P1-201ENST00000603626 1168 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 EIF3FP1-201ENST00000613970 806 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 FRG1HP-204ENST00000617940 757 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 U6.107-201ENST00000637108 79 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.19□□□□□ -1.74
NKX3-1Q99801 AL627171.1-201ENST00000618845 1308 ntBASIC4.19□□□□□ -1.74
NKX3-1Q99801 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
NKX3-1Q99801 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AP001273.1-201ENST00000624493 3152 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 RNU1-83P-201ENST00000363426 164 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RN7SKP103-201ENST00000363848 320 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 BMS1P3-201ENST00000372011 932 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 SNORD65C-201ENST00000390962 71 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 FABP7P1-201ENST00000424004 391 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 FABP7P2-201ENST00000429946 379 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 FTH1P16-201ENST00000435241 552 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC004938.1-201ENST00000438468 308 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms