Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UBE2V1P2-201ENST00000397758 440 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 TCEA1P2-201ENST00000420496 906 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AL160175.1-201ENST00000428124 247 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 CEACAMP1-201ENST00000434624 1035 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 RNA5SP446-201ENST00000515955 82 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 OR8I1P-201ENST00000529291 931 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 HMGB2P1-201ENST00000591146 634 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AC009229.4-201ENST00000623854 1947 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 HSFY4P-201ENST00000415994 1181 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 Z75741.1-201ENST00000446793 314 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 RPL38P1-201ENST00000460914 211 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 RPL7P1-201ENST00000468161 747 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AL049874.2-201ENST00000492636 288 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 BNIP3P41-201ENST00000503774 571 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 AC091167.4-201ENST00000605079 184 ntBASIC3.9□□□□□ -1.79
VPS13AQ96RL7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS13AQ96RL7 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC083837.1-201ENST00000565297 2994 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 APOOP2-201ENST00000461561 539 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 RN7SL601P-201ENST00000471221 293 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 RN7SL504P-201ENST00000494496 287 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC034105.3-201ENST00000565294 442 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC073073.2-201ENST00000609827 2578 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 MIR8057-201ENST00000620957 69 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 ZNF962P-201ENST00000443465 3140 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 PEX12P1-201ENST00000400284 1048 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 RPL21P23-201ENST00000446654 460 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC096576.1-201ENST00000489014 359 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 RNA5SP116-201ENST00000516132 98 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 NPM1P47-201ENST00000560843 856 ntBASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 LYST-202ENST00000389794 12985 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS13AQ96RL7 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AC073063.1-201ENST00000434352 607 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AC005726.1-201ENST00000494679 427 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 FTH1P24-201ENST00000503502 462 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AC010285.3-201ENST00000511668 676 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 BDH2P1-201ENST00000602288 736 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AL353726.1-201ENST00000614041 1000 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 OSBPL9P1-201ENST00000604744 1469 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 MYL12BP2-201ENST00000503948 512 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 RANP9-201ENST00000519957 271 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 NAP1L4P1-201ENST00000319092 1157 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 RPS3AP46-201ENST00000448352 682 ntBASIC3.88□□□□□ -1.79
VPS13AQ96RL7 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms