Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC091979.2-201ENST00000607514 214 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC087385.3-201ENST00000620477 187 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.68
VPS39Q96JC1 AL136964.1-201ENST00000622038 2990 ntBASIC4.59□□□□□ -1.68
VPS39Q96JC1 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC108467.2-201ENST00000617640 1597 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC131971.1-201ENST00000332881 1482 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 RNU1-87P-201ENST00000363727 170 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 RNA5SP113-201ENST00000410486 84 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 RPL21P108-201ENST00000413857 481 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 BX510359.2-201ENST00000417920 305 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 CYCSP10-201ENST00000417973 294 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 VN1R54P-201ENST00000435210 1049 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 ISCUP1-201ENST00000454451 448 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 RPL7P16-201ENST00000479738 738 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC012158.1-204ENST00000483430 465 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC107398.1-201ENST00000486904 505 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 OR4A2P-201ENST00000527276 913 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AL110118.1-201ENST00000553543 400 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 MIR3667-201ENST00000581025 74 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AC115085.1-201ENST00000588924 229 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AP004607.9-201ENST00000618202 316 ntBASIC4.58□□□□□ -1.68
VPS39Q96JC1 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.58□□□□□ -1.68
VPS39Q96JC1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS39Q96JC1 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC010300.1-201ENST00000600671 5134 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 RN7SKP149-201ENST00000363008 344 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 SNORA71.2-201ENST00000364941 134 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 SNORA51.8-201ENST00000384234 132 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 HDGFP1-201ENST00000405943 252 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 RN7SKP167-201ENST00000411047 285 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 HMGB1P5-202ENST00000451497 985 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC063943.1-201ENST00000465434 453 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC104763.1-201ENST00000475274 360 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 RNA5SP497-201ENST00000516081 97 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 RN7SKP276-201ENST00000516242 268 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 RNU6-889P-201ENST00000517189 103 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC021483.2-201ENST00000567415 758 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 ADAD1P2-201ENST00000588476 646 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC067852.4-201ENST00000590314 478 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC005084.1-201ENST00000605160 304 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AL353726.1-201ENST00000614041 1000 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC074276.2-201ENST00000619891 348 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC091905.2-201ENST00000623143 306 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS39Q96JC1 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.57□□□□□ -1.68
VPS39Q96JC1 AC092162.3-201ENST00000624511 1624 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 SDAD1P1-202ENST00000524156 2051 ntBASIC4.57□□□□□ -1.68
VPS39Q96JC1 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS39Q96JC1 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS39Q96JC1 AL109941.1-201ENST00000401925 229 ntBASIC4.56□□□□□ -1.68
VPS39Q96JC1 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS39Q96JC1 RN7SKP100-201ENST00000411258 284 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms